Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 2.4e-195 685.3 339 100.0
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 7.3e-115 417.9 332 66.3
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 8.1e-114 414.5 338 65.4
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 6.8e-113 411.4 337 64.4
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.5e-112 410.2 338 64.5
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 3.2e-110 402.5 335 64.5
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 2.1e-109 399.8 338 62.7
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 7.8e-109 397.9 333 63.1
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 1.3e-108 397.1 331 63.4
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 5.1e-108 395.2 331 63.1
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.5e-107 393.7 335 61.5
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.9e-107 393.3 332 63.3
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 3.3e-107 392.5 335 62.1
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 4.3e-107 392.1 332 61.4
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 7.3e-107 391.3 336 61.3
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 1.6e-106 390.2 337 61.7
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.1e-106 389.8 333 62.5
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.1e-106 389.8 336 62.5
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 2.8e-106 389.4 332 62.3
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 3.6e-106 389.0 335 62.7
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 4.7e-106 388.7 336 62.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 4.7e-106 388.7 336 62.8
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.4e-105 387.1 331 62.5
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 1.4e-105 387.1 332 62.3
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 1.4e-105 387.1 332 61.7
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.1e-105 386.0 336 62.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 5.2e-105 385.2 331 62.2
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 5.2e-105 385.2 332 62.3
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 8.9e-105 384.4 331 61.3
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 1.5e-104 383.6 335 61.5
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 3.4e-104 382.5 330 60.9
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 4.4e-104 382.1 332 60.5
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.8e-104 381.7 337 61.1
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 5.8e-104 381.7 330 60.6
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 5.8e-104 381.7 332 61.1
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 5.8e-104 381.7 336 61.3
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 9.9e-104 380.9 335 61.2
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 1.3e-103 380.6 335 61.8
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 1.3e-103 380.6 331 61.6
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.3e-103 380.6 333 60.1
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.3e-103 380.6 338 60.4
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 1.7e-103 380.2 335 60.6
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 2.2e-103 379.8 335 60.6
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 2.9e-103 379.4 335 60.6
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 4.9e-103 378.6 332 60.5
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 4.9e-103 378.6 331 60.7
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.4e-103 378.3 336 61.6
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.1e-102 377.5 331 61.0
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 1.1e-102 377.5 332 60.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 1.1e-102 377.5 330 60.9
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.4e-102 377.1 340 57.4
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 1.4e-102 377.1 335 60.9
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.9e-102 376.7 336 59.8
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 2.4e-102 376.3 331 60.7
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.4e-102 376.3 336 59.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 5.4e-102 375.2 332 60.2
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 7.1e-102 374.8 332 60.2
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 9.2e-102 374.4 332 60.2
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 9.2e-102 374.4 348 59.8
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.6e-101 373.6 334 59.3
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.1e-101 373.2 336 58.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 2.7e-101 372.9 332 60.2
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.7e-101 372.9 337 58.5
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.5e-101 372.5 332 59.6
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.6e-101 372.1 340 58.8
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 4.6e-101 372.1 298 68.5
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 4.6e-101 372.1 330 60.0
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 7.8e-101 371.3 333 58.0
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 7.8e-101 371.3 337 58.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 7.8e-101 371.3 338 58.6
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 7.8e-101 371.3 332 60.2
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 1.0e-100 370.9 338 60.1
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.3e-100 370.5 332 59.6
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 1.3e-100 370.5 331 59.8
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.7e-100 370.2 340 58.5
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.9e-100 369.0 336 58.3
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 6.6e-100 368.2 331 59.2
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 6.6e-100 368.2 340 57.6
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.1e-99 367.5 336 57.4
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.9e-99 366.7 336 57.4
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.9e-99 366.7 340 58.5
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 5.6e-99 365.2 337 58.5
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 5.6e-99 365.2 339 58.4
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 7.3e-99 364.8 331 58.6
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 1.6e-98 363.6 326 59.5
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 3.6e-98 362.5 332 58.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 6.2e-98 361.7 337 57.9
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 6.2e-98 361.7 332 57.8
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 8.1e-98 361.3 332 59.6
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 1.8e-97 360.1 357 55.7
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.4e-97 359.8 337 57.0
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 9.0e-97 357.8 330 57.9
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 2.0e-96 356.7 332 57.5
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 2.0e-96 356.7 331 58.0
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 3.4e-96 355.9 337 56.1
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 1.3e-95 354.0 340 56.8
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.3e-95 354.0 342 57.0
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.7e-95 353.6 352 55.7
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 3.8e-95 352.4 331 58.9
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 4.9e-95 352.1 331 58.3
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 4.9e-95 352.1 333 57.7
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.1e-94 350.9 331 58.3
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.1e-94 350.9 338 58.0
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.9e-94 350.1 339 56.9
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 7.1e-94 348.2 331 58.0
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 7.8e-93 344.7 338 56.2
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 6.6e-92 341.7 336 54.8
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.5e-91 340.5 375 51.7
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.4e-89 333.2 333 55.9
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 4.5e-88 328.9 333 55.6
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 3.0e-84 316.2 290 59.0
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.5e-83 313.9 182 84.1
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 2.1e-82 310.1 330 50.3
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 4.5e-80 302.4 303 54.8
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 8.4e-79 298.1 182 78.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.4e-78 297.4 295 54.9
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 9.3e-78 294.7 182 79.1
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 7.9e-77 291.6 334 47.6
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 7.9e-77 291.6 182 78.0
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 8.7e-76 288.1 241 62.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 8.2e-74 281.6 313 49.8
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 3.1e-73 279.6 331 49.5
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.3e-71 274.2 336 45.8
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.3e-68 264.2 337 47.2
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 5.7e-67 258.8 334 44.9
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.5e-62 242.3 188 65.4
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-61 241.1 182 68.7
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.4e-60 237.7 297 45.1
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.7e-55 220.7 188 62.2
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 2.2e-55 220.3 182 59.3
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 1.4e-54 217.6 131 81.7
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 4.2e-54 216.1 347 41.8
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 7.2e-54 215.3 345 40.0
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 1.3e-50 204.5 344 38.4
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 4.1e-49 199.5 332 38.9
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 4.5e-48 196.1 127 72.4
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 7.7e-48 195.3 226 49.6
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 8.0e-45 185.3 341 37.5
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.8e-36 157.5 156 57.1
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.0e-31 141.7 241 40.2
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.7e-24 117.1 75 73.3
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 1.8e-20 104.4 70 70.0
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 2.3e-20 104.0 67 73.1
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.7e-18 97.8 64 70.3
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 2.1e-13 80.9 149 39.6
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 1.7e-07 61.2 44 61.4
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 3.9e-07 60.1 43 60.5


User provided reference genes

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