Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.9e-65 252.3 122 100.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 9.5e-65 250.0 122 99.2
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.1e-60 236.5 120 92.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.6e-56 221.5 122 84.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 8.0e-56 220.3 122 84.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 3.1e-55 218.4 122 82.8
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.0e-54 215.7 122 81.1
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.0e-54 215.7 122 81.1
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 4.4e-54 214.5 120 82.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.3e-53 213.0 118 82.2
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.9e-53 211.8 120 79.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.7e-53 211.5 122 81.1
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.1e-49 199.9 120 77.5
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.1e-47 193.4 109 81.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.4e-46 188.0 122 69.7
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.4e-44 182.2 124 68.5
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 3.0e-42 175.3 122 64.8
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 3.3e-41 171.8 122 63.9
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 2.1e-40 169.1 122 63.9
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.0e-38 162.5 120 60.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.6e-35 151.4 105 65.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.3e-34 149.8 115 61.7
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 5.6e-33 144.4 120 57.5
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 7.3e-33 144.1 120 54.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.2e-32 143.3 120 57.5
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 4.7e-32 141.4 120 55.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.1e-31 140.2 115 56.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.1e-31 138.7 118 57.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.0e-31 138.3 122 54.1
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 4.0e-31 138.3 127 53.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 8.9e-31 137.1 126 51.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.2e-30 136.7 122 53.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 5.8e-30 134.4 120 52.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 7.6e-30 134.0 120 53.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 7.6e-30 134.0 118 56.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 7.6e-30 134.0 127 54.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 9.9e-30 133.7 120 51.7
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 9.9e-30 133.7 120 53.3
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 55.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 51.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 52.5
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 53.3
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 53.3
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.9e-29 132.1 126 48.4
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.8e-29 131.7 122 54.9
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.8e-29 131.7 126 48.4
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.8e-29 131.7 126 48.4
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 3.8e-29 131.7 120 50.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 55.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 4.9e-29 131.3 119 52.9
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 6.4e-29 131.0 122 55.7
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 6.4e-29 131.0 120 54.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 8.4e-29 130.6 120 51.7
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.4e-29 130.6 119 52.9
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.4e-28 129.8 127 52.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.9e-28 129.4 120 50.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.9e-28 129.4 120 50.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-28 129.4 119 52.9
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 49.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 5.4e-28 127.9 119 51.3
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 5.4e-28 127.9 120 52.5
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 7.1e-28 127.5 120 52.5
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 7.1e-28 127.5 129 47.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.1e-28 127.5 120 53.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 52.5
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 52.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 52.5
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 53.3
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 49.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 52.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 50.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-27 126.7 119 52.1
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 52.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.7e-27 125.6 120 48.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 48.3
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 52.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 6.0e-27 124.4 117 50.4
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.0e-26 123.6 120 51.7
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.0e-26 123.6 119 50.4
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.9e-26 121.7 127 44.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 3.9e-26 121.7 127 47.2
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 49.2
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 49.2
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 49.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.1e-25 120.2 117 50.4
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.9e-25 119.4 121 50.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.5e-25 119.0 122 50.8
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 9.6e-25 117.1 122 50.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 47.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.3e-23 111.3 115 49.6
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 3.4e-22 108.6 115 45.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.7e-21 106.3 113 46.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.8e-21 105.1 124 43.5
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.4e-20 102.4 123 42.3
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 4.2e-20 101.7 112 42.0
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.6e-19 99.8 124 40.3
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.1e-19 99.4 122 44.3
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.0e-18 97.1 97 45.4
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.6e-18 94.4 74 59.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.6e-17 91.3 79 51.9
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 9.0e-15 84.0 154 31.2
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.2e-14 83.6 53 67.9
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 4.5e-14 81.6 124 33.9
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.8e-13 78.6 62 58.1
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 4.9e-13 78.2 90 42.2
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.4e-12 76.6 62 56.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.4e-12 76.6 54 53.7
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.9e-12 76.3 87 44.8
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 7.1e-12 74.3 115 33.0
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 7.1e-12 74.3 80 45.0
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.6e-11 73.2 114 34.2
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 3.5e-11 72.0 63 46.0
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.8e-10 69.7 82 43.9
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.5e-09 65.9 82 41.5
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 7.4e-09 64.3 53 56.6
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 9.6e-09 63.9 91 41.8
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.3e-08 63.5 40 65.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.1e-08 62.8 71 46.5
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 6.2e-08 61.2 134 28.4
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 4.0e-07 58.5 31 74.2
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.3e-07 58.2 67 44.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 5.3e-07 58.2 84 38.1
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.5e-06 56.6 57 43.9
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.6e-06 55.8 84 36.9
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.6e-06 54.3 52 50.0
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 7.6e-06 54.3 66 40.9
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 1.0e-05 53.9 54 50.0


User provided reference genes

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