Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 9.9e-45 183.3 111 100.0
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.4e-19 99.8 73 71.2
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 2.5e-19 99.0 71 73.2
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 4.2e-19 98.2 70 71.4
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 7.1e-19 97.4 72 69.4
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 9.3e-19 97.1 74 66.2
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 1.2e-18 96.7 71 73.2
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.2e-18 96.7 73 67.1
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 1.6e-18 96.3 69 72.5
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 4.6e-18 94.7 72 68.1
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 4.6e-18 94.7 70 70.0
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 4.6e-18 94.7 74 64.9
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 4.6e-18 94.7 73 67.1
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 6.0e-18 94.4 73 64.4
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.3e-17 93.2 70 68.6
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.8e-17 92.8 74 67.6
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 3.9e-17 91.7 74 66.2
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 3.9e-17 91.7 70 65.7
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 3.9e-17 91.7 71 62.0
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 5.1e-17 91.3 68 69.1
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 6.7e-17 90.9 68 69.1
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 8.7e-17 90.5 71 63.4
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.5e-16 89.7 70 62.9
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.9e-16 89.4 70 62.9
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.5e-16 89.0 68 69.1
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.5e-16 89.0 74 63.5
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 3.3e-16 88.6 69 63.8
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 3.3e-16 88.6 74 59.5
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 5.7e-16 87.8 70 62.9
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.7e-16 87.8 68 69.1
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.7e-16 87.8 68 69.1
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 5.7e-16 87.8 73 63.0
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 5.7e-16 87.8 71 60.6
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 5.7e-16 87.8 72 62.5
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 7.4e-16 87.4 68 69.1
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 7.4e-16 87.4 69 65.2
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 9.7e-16 87.0 73 58.9
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 9.7e-16 87.0 69 65.2
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 9.7e-16 87.0 69 63.8
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 9.7e-16 87.0 72 65.3
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 9.7e-16 87.0 72 61.1
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 9.7e-16 87.0 69 63.8
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 9.7e-16 87.0 74 63.5
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 9.7e-16 87.0 71 63.4
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 9.7e-16 87.0 70 61.4
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.3e-15 86.7 70 61.4
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.3e-15 86.7 68 64.7
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 1.3e-15 86.7 69 66.7
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.3e-15 86.7 72 58.3
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.6e-15 86.3 70 61.4
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.6e-15 86.3 70 65.7
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 1.6e-15 86.3 67 67.2
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 1.6e-15 86.3 70 62.9
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.6e-15 86.3 68 67.6
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.2e-15 85.9 70 61.4
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 2.2e-15 85.9 70 65.7
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 2.2e-15 85.9 68 67.6
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 2.2e-15 85.9 68 67.6
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.2e-15 85.9 69 62.3
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.8e-15 85.5 71 64.8
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 2.8e-15 85.5 70 60.0
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 2.8e-15 85.5 70 62.9
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 3.7e-15 85.1 70 61.4
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.7e-15 85.1 69 63.8
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 3.7e-15 85.1 73 61.6
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 3.7e-15 85.1 74 59.5
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 4.8e-15 84.7 70 61.4
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 4.8e-15 84.7 67 62.7
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 4.8e-15 84.7 68 63.2
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 4.8e-15 84.7 74 59.5
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 6.3e-15 84.3 70 62.9
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 6.3e-15 84.3 70 61.4
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 6.3e-15 84.3 70 61.4
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 6.3e-15 84.3 70 61.4
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 8.2e-15 84.0 70 61.4
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 8.2e-15 84.0 67 65.7
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 8.2e-15 84.0 67 64.2
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 8.2e-15 84.0 67 64.2
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 8.2e-15 84.0 70 61.4
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.1e-14 83.6 70 61.4
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.1e-14 83.6 74 58.1
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.1e-14 83.6 70 61.4
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 1.1e-14 83.6 70 61.4
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 1.1e-14 83.6 68 64.7
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 1.1e-14 83.6 68 64.7
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.4e-14 83.2 70 61.4
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.4e-14 83.2 72 61.1
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 1.8e-14 82.8 70 60.0
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 2.4e-14 82.4 70 61.4
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.4e-14 82.4 67 64.2
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 3.1e-14 82.0 67 64.2
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 3.1e-14 82.0 69 60.9
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 3.1e-14 82.0 72 61.1
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 3.1e-14 82.0 66 63.6
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.1e-14 81.6 67 64.2
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.1e-14 81.6 67 64.2
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.1e-14 81.6 69 59.4
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.1e-14 81.6 69 59.4
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 4.1e-14 81.6 69 59.4
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 4.1e-14 81.6 70 62.9
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.1e-14 81.6 70 58.6
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 5.3e-14 81.3 72 58.3
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 6.9e-14 80.9 70 61.4
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 6.9e-14 80.9 70 61.4
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 6.9e-14 80.9 69 59.4
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 9.0e-14 80.5 70 61.4
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 9.0e-14 80.5 67 61.2
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 1.2e-13 80.1 70 61.4
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 1.5e-13 79.7 70 60.0
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 2.0e-13 79.3 71 60.6
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.0e-13 79.3 67 62.7
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.0e-13 79.3 70 57.1
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 2.6e-13 79.0 70 58.6
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 3.4e-13 78.6 68 58.8
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 3.4e-13 78.6 68 58.8
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 3.4e-13 78.6 68 58.8
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 3.4e-13 78.6 68 58.8
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 4.5e-13 78.2 68 60.3
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 5.9e-13 77.8 68 58.8
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.9e-13 77.8 70 57.1
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 5.9e-13 77.8 70 57.1
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 5.9e-13 77.8 70 58.6
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 7.6e-13 77.4 71 57.7
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 7.6e-13 77.4 69 60.9
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 7.6e-13 77.4 68 61.8
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.0e-12 77.0 61 63.9
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.0e-12 77.0 70 57.1
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.7e-12 76.3 68 57.4
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 1.7e-12 76.3 68 57.4
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.7e-12 76.3 70 55.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 2.9e-12 75.5 66 57.6
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.9e-12 75.5 71 53.5
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.8e-12 75.1 60 63.3
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 3.8e-12 75.1 67 58.2
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 5.0e-12 74.7 62 62.9
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 5.0e-12 74.7 65 58.5
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.5e-12 74.3 69 58.0
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.9e-11 72.8 67 58.2
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-11 72.8 67 58.2
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-11 72.8 67 58.2
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-11 72.8 67 58.2
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 5.5e-11 71.2 67 58.2
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 5.5e-11 71.2 69 56.5
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 2.7e-10 68.9 67 56.7
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 7.9e-10 67.4 70 50.0
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.3e-09 65.9 72 51.4
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 4.3e-08 61.6 53 62.3
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 4.3e-08 61.6 72 44.4
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 2.2e-07 59.3 45 60.0
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 3.7e-07 58.5 67 49.3
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 4.8e-07 58.2 41 61.0
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 4.8e-07 58.2 72 40.3
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 9.1e-06 53.9 41 53.7


User provided reference genes

Program Settings