Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 1.7e-276 955.3 461 100.0
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 6.3e-186 654.4 455 69.5
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.5e-184 648.7 458 68.8
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 7.7e-184 647.5 444 71.8
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 1.0e-180 637.1 462 68.0
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.0e-180 635.6 462 67.7
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 5.2e-180 634.8 462 67.1
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 8.8e-180 634.0 462 67.5
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 2.0e-179 632.9 459 68.0
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.6e-179 632.5 463 66.5
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-178 630.2 462 65.8
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.1e-177 627.1 464 66.8
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.1e-177 627.1 461 64.9
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.8e-177 626.3 461 64.6
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.4e-177 625.9 459 66.7
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 4.1e-177 625.2 483 64.0
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 5.3e-177 624.8 460 66.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.2e-176 623.6 464 66.4
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.6e-176 623.2 461 64.6
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.7e-176 622.5 459 66.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 3.5e-176 622.1 420 72.4
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.3e-175 620.2 459 66.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.7e-175 619.8 464 66.2
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.7e-175 619.8 464 65.9
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.2e-175 619.4 462 65.4
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 5.0e-175 618.2 462 65.6
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 6.5e-175 617.8 459 66.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 8.5e-175 617.5 463 67.2
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 8.5e-175 617.5 462 64.9
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.5e-174 616.7 462 65.4
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.9e-174 616.3 464 65.7
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.5e-174 615.9 460 66.5
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.2e-174 615.5 462 66.0
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.2e-174 615.5 462 65.2
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 7.2e-174 614.4 462 65.6
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.2e-173 613.6 459 65.6
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.6e-173 613.2 457 65.6
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.1e-173 612.8 462 65.2
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 4.7e-173 611.7 463 65.0
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 4.7e-173 611.7 461 63.8
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 4.7e-173 611.7 459 64.9
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.0e-172 610.5 460 65.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.4e-172 610.1 458 64.0
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.8e-172 609.8 459 64.3
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.0e-172 608.6 465 64.9
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.0e-172 608.6 462 65.2
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.0e-172 608.6 462 65.2
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 5.2e-172 608.2 462 62.8
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.8e-172 607.8 462 64.9
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 8.8e-172 607.4 459 65.1
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 8.8e-172 607.4 462 65.6
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.2e-171 607.1 469 63.5
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.5e-171 606.7 461 64.4
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.0e-171 606.3 465 64.7
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.6e-171 605.9 459 62.7
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.4e-171 605.5 462 64.9
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 4.4e-171 605.1 459 64.9
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 7.5e-171 604.4 460 65.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 9.8e-171 604.0 483 62.9
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 4.8e-170 601.7 462 62.1
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.4e-169 600.1 462 64.3
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.8e-169 599.7 459 64.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 5.4e-169 598.2 460 62.6
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 7.0e-169 597.8 462 63.4
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.2e-168 597.0 461 63.1
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.6e-168 596.7 459 64.3
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 2.0e-168 596.3 464 65.1
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.7e-168 595.9 534 57.1
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 2.7e-168 595.9 462 61.9
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 7.7e-168 594.3 459 62.7
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.0e-167 594.0 462 62.8
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.7e-167 593.2 460 63.5
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.7e-167 593.2 462 62.6
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 3.2e-166 589.0 537 57.0
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 5.5e-166 588.2 464 62.7
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 1.6e-165 586.6 478 60.7
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.1e-165 586.3 463 61.6
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 3.6e-165 585.5 464 63.1
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.8e-164 583.2 465 62.4
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.8e-164 583.2 462 61.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.3e-164 582.8 462 61.3
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.3e-164 582.8 489 60.7
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 3.0e-164 582.4 463 61.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.0e-164 582.4 448 64.7
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 3.0e-164 582.4 462 61.9
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 3.0e-164 582.4 457 62.1
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 4.0e-164 582.0 464 60.6
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 8.8e-164 580.9 463 61.1
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.5e-163 580.1 457 61.7
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.5e-163 580.1 485 61.0
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.7e-162 576.6 457 61.5
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 4.9e-162 575.1 449 61.7
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 6.3e-162 574.7 458 60.9
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.8e-161 573.2 449 61.7
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 2.4e-161 572.8 449 61.5
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 3.1e-161 572.4 449 61.7
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 5.4e-161 571.6 449 61.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 9.2e-161 570.9 449 61.7
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.7e-160 569.3 463 61.8
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 4.5e-160 568.5 477 58.9
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.9e-158 563.1 460 61.7
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.8e-157 559.3 568 52.3
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.6e-157 558.9 458 60.3
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 4.7e-157 558.5 446 61.9
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.8e-156 556.6 434 63.6
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.8e-156 556.6 465 58.3
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 4.0e-156 555.4 458 60.0
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.8e-156 554.7 463 60.7
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.5e-155 553.5 427 64.2
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.5e-155 551.2 419 64.9
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.4e-153 547.0 458 60.7
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 4.1e-153 545.4 353 74.2
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.0e-153 544.7 419 64.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.7e-152 542.7 456 60.3
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 2.5e-150 536.2 387 67.7
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 1.1e-142 510.8 466 57.1
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 5.6e-142 508.4 473 55.8
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 5.6e-142 508.4 464 55.4
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.2e-141 507.3 447 57.0
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.9e-140 501.1 349 68.8
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 5.6e-126 455.3 461 54.0
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.2e-120 437.6 446 51.3
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 9.9e-115 417.9 313 65.5
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.5e-110 403.3 412 51.2
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.3e-101 374.4 317 60.6
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.9e-97 360.5 270 65.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.1e-93 347.1 487 41.7
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 2.1e-93 347.1 256 65.2
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.1e-87 325.9 261 61.7
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.6e-72 277.7 329 46.5
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 2.7e-72 276.9 199 64.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 7.9e-72 275.4 241 55.6
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.7e-66 257.7 220 55.5
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-66 256.9 252 52.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 4.5e-51 206.5 138 70.3
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 8.0e-48 195.7 163 60.1
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 7.0e-36 156.0 140 56.4
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 7.3e-33 146.0 102 65.7
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 8.0e-32 142.5 107 62.6
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 5.2e-31 139.8 93 67.7
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.9e-28 131.3 158 46.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 3.4e-22 110.5 176 41.5
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.3e-21 108.6 112 55.4
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.6e-19 101.7 97 57.7
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 6.4e-13 79.7 57 59.6
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 2.4e-07 61.2 58 51.7
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 4.0e-07 60.5 66 54.5
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 6.9e-07 59.7 57 57.9
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 9.0e-07 59.3 47 59.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 9.0e-07 59.3 47 59.6


User provided reference genes

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