Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4653G54517 Striga asiatica HOM05D001598 ORTHO05D002757 4.8e-114 414.5 203 100.0
SGA_v2.0_scaffold53G19414 Striga asiatica HOM05D001598 ORTHO05D002757 1.6e-85 319.7 196 85.2
SalBow2G2991 Salvia bowleyana HOM05D001598 ORTHO05D002757 3.1e-60 235.7 192 67.2
MSTRG.691 Avicennia marina HOM05D001598 ORTHO05D002757 8.9e-60 234.2 196 67.3
Migut.L01310 Erythranthe guttata HOM05D001598 ORTHO05D002757 8.9e-60 234.2 195 67.2
SalBow2G3361 Salvia bowleyana HOM05D001598 ORTHO05D002757 1.5e-59 233.4 192 66.7
Oeu013623.1 Olea europaea HOM05D001598 ORTHO05D002757 1.0e-47 194.1 195 60.5
unitig_22.g6913 Utricularia gibba HOM05D001598 ORTHO05D001528 1.3e-47 193.7 194 58.8
Cc11_g13210 Coffea canephora HOM05D001598 ORTHO05D002757 1.4e-44 183.7 207 55.6
CAN.G38.31 Capsicum annuum HOM05D001598 ORTHO05D002757 1.5e-38 163.7 200 54.0
Nitab4.5_0003566g0010 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.5e-38 162.9 197 52.3
Nitab4.5_0000141g0270 Nicotiana tabacum HOM05D001598 ORTHO05D002757 9.6e-38 161.0 197 52.8
Solyc01g010570.4 Solanum lycopersicum HOM05D001598 ORTHO05D002757 5.3e-36 155.2 204 50.5
Sopen01g006220 Solanum pennellii HOM05D001598 ORTHO05D002757 2.0e-35 153.3 201 51.7
AL5G12440 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 4.5e-35 152.1 162 53.1
DCAR_021706 Daucus carota HOM05D001598 ORTHO05D002757 7.6e-35 151.4 165 53.9
vmacro01241 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 7.6e-35 151.4 199 48.2
vmacro01243 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 7.6e-35 151.4 199 48.2
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.3e-34 150.6 168 53.6
Peaxi162Scf00026g03113 Petunia axillaris HOM05D001598 ORTHO05D002757 2.9e-34 149.4 189 48.7
MD13G1073900 Malus domestica HOM05D001598 ORTHO05D002757 3.8e-34 149.1 198 48.0
Lj8A728T10 Lonicera japonica HOM05D001598 ORTHO05D002757 1.4e-33 147.1 176 52.8
Prupe.1G272100 Prunus persica HOM05D001598 ORTHO05D002757 4.2e-33 145.6 197 47.2
Prupe.3G107100 Prunus persica HOM05D001598 ORTHO05D002757 4.2e-33 145.6 197 46.7
Glyma.01G045300 Glycine max HOM05D001598 ORTHO05D002757 5.5e-33 145.2 164 51.2
TAR629G0383 Trochodendron aralioides HOM05D001598 ORTHO05D002757 9.3e-33 144.4 154 53.2
TAR629G1744 Trochodendron aralioides HOM05D001598 ORTHO05D002757 9.3e-33 144.4 154 53.2
Medtr5g039440 Medicago truncatula HOM05D001598 ORTHO05D002757 1.2e-32 144.1 162 52.5
QL03p064604 Quercus lobata HOM05D001598 ORTHO05D002757 1.6e-32 143.7 150 55.3
CSS0022192 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 2.7e-32 142.9 206 46.6
MD16G1075100 Malus domestica HOM05D001598 ORTHO05D002757 3.5e-32 142.5 197 46.2
PGR119G0480 Punica granatum HOM05D001598 ORTHO05D002757 3.5e-32 142.5 174 47.7
TPR.G37035 Trifolium pratense HOM05D001598 ORTHO05D002757 3.5e-32 142.5 157 51.6
ECA234G4840 Erigeron canadensis HOM05D001598 ORTHO05D002757 4.6e-32 142.1 163 50.9
Sp2g13960 Schrenkiella parvula HOM05D001598 ORTHO05D002757 4.6e-32 142.1 179 46.4
AT2G02880 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 7.9e-32 141.4 171 50.3
Lalb_Chr10g0098161 Lupinus albus HOM05D001598 ORTHO05D002757 7.9e-32 141.4 176 46.0
arahy.Tifrunner.gnm1.ann1.5WK4WG Arachis hypogaea HOM05D001598 ORTHO05D002757 1.0e-31 141.0 172 48.8
arahy.Tifrunner.gnm1.ann1.Z4M8GV Arachis hypogaea HOM05D001598 ORTHO05D002757 1.0e-31 141.0 172 48.8
MELO3C015610.2 Cucumis melo HOM05D001598 ORTHO05D002757 1.0e-31 141.0 178 47.8
Thhalv10004617m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 1.0e-31 141.0 189 46.0
Aqoxy3G00689 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 1.3e-31 140.6 190 45.8
HanXRQChr12g0371061 Helianthus annuus HOM05D001598 ORTHO05D002757 1.3e-31 140.6 189 47.6
Carub.0005s0177 Capsella rubella HOM05D001598 ORTHO05D002757 1.8e-31 140.2 182 47.8
Haze_12029 Corylus avellana HOM05D001598 ORTHO05D002757 1.8e-31 140.2 193 46.6
Hund25254 Selenicereus undatus HOM05D001598 ORTHO05D002757 3.0e-31 139.4 188 44.1
Aa31LG2G7420 Aethionema arabicum HOM05D001598 ORTHO05D002757 6.7e-31 138.3 201 44.3
FvH4_4g31560 Fragaria vesca HOM05D001598 ORTHO05D002757 8.7e-31 137.9 154 51.9
Psat2g121440 Pisum sativum HOM05D001598 ORTHO05D002757 1.1e-30 137.5 195 45.6
Potri.015G004400 Populus trichocarpa HOM05D001598 ORTHO05D002757 1.1e-30 137.5 158 52.5
arahy.Tifrunner.gnm1.ann1.BUM29L Arachis hypogaea HOM05D001598 ORTHO05D002757 1.5e-30 137.1 173 48.6
COL.COLO4_22982 Corchorus olitorius HOM05D001598 ORTHO05D010176 1.5e-30 137.1 202 42.6
Sabra15G0003000 Salix brachista HOM05D001598 ORTHO05D002757 1.5e-30 137.1 157 50.3
A02p33170 Brassica napus HOM05D001598 ORTHO05D002757 2.5e-30 136.3 156 51.3
BraA02t08340Z Brassica rapa HOM05D001598 ORTHO05D002757 2.5e-30 136.3 156 51.3
AUR62028804 Chenopodium quinoa HOM05D001598 ORTHO05D002757 2.5e-30 136.3 162 50.6
Duzib251G0726 Durio zibethinus HOM05D001598 ORTHO05D002757 4.3e-30 135.6 195 45.1
FAN12G4270 Fragaria x ananassa HOM05D001598 ORTHO05D002757 4.3e-30 135.6 157 51.6
Nn4g23114 Nelumbo nucifera HOM05D001598 ORTHO05D002757 5.7e-30 135.2 205 45.9
ClCG03G014280 Citrullus lanatus HOM05D001598 ORTHO05D002757 9.6e-30 134.4 203 42.4
CsaV3_1G041940 Cucumis sativus L. HOM05D001598 ORTHO05D002757 9.6e-30 134.4 161 49.7
Thecc.02G349900 Theobroma cacao HOM05D001598 ORTHO05D002757 9.6e-30 134.4 192 45.8
Ca_04769_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 1.3e-29 134.0 202 44.1
Ca_30734_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 1.3e-29 134.0 202 44.1
Phvul.002G086800 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 2.1e-29 133.3 161 47.8
Glyma.02G105700 Glycine max HOM05D001598 ORTHO05D002757 2.8e-29 132.9 201 44.3
Gohir.A03G104500 Gossypium hirsutum HOM05D001598 ORTHO05D002757 2.8e-29 132.9 166 48.2
Gorai.003G147700 Gossypium raimondii HOM05D001598 ORTHO05D002757 2.8e-29 132.9 166 48.2
TWI18G0113 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 2.8e-29 132.9 161 50.9
Gohir.D11G326400 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.8e-29 132.1 166 46.4
Gohir.D03G140900 Gossypium hirsutum HOM05D001598 ORTHO05D002757 6.3e-29 131.7 166 47.6
CANSAT64G1213 Cannabis sativa HOM05D001598 ORTHO05D002757 8.2e-29 131.3 153 50.3
Rhsim12G0061700 Rhododendron simsii HOM05D001645 ORTHO05D002757 8.2e-29 131.3 194 45.9
Ciclev10032165m.g Citrus clementina HOM05D001598 ORTHO05D002757 1.1e-28 131.0 159 49.1
Atru.chr11.1822 Acer truncatum HOM05D001598 ORTHO05D002757 1.4e-28 130.6 197 44.2
BcaB07g30318 Brassica carinata HOM05D001598 ORTHO05D002757 1.4e-28 130.6 197 42.6
Gohir.D03G140800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.8e-28 130.2 166 47.6
Gohir.D02G129600 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.1e-28 129.0 166 47.0
Lj2g0010789 Lotus japonicus HOM05D001598 ORTHO05D002757 4.1e-28 129.0 199 43.7
Sed0011075 Sechium edule HOM05D001598 ORTHO05D002757 4.1e-28 129.0 176 46.0
PSO017G4006 Papaver somniferum HOM05D001598 ORTHO05D002757 6.9e-28 128.3 165 46.7
Gorai.005G145600 Gossypium raimondii HOM05D001598 ORTHO05D002757 9.0e-28 127.9 166 47.0
EL10Ac6g13181 Beta vulgaris HOM05D001598 ORTHO05D002757 1.2e-27 127.5 167 45.5
CARHR145320 Cardamine hirsuta HOM05D001598 ORTHO05D002757 2.0e-27 126.7 193 41.5
PSO478G0282 Papaver somniferum HOM05D001598 ORTHO05D002757 2.6e-27 126.3 169 47.3
MBI05_g28392_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 5.9e-27 125.2 199 42.2
Gohir.D02G129700 Gossypium hirsutum HOM05D001598 ORTHO05D002757 7.6e-27 124.8 166 45.8
Lsat_1_v5_gn_8_4521 Lactuca sativa HOM05D001598 ORTHO05D002757 1.0e-26 124.4 178 46.6
BcaC03g17175 Brassica carinata HOM05D001598 ORTHO05D002757 1.3e-26 124.0 166 47.0
Cpa.g.sc1763.1 Carica papaya HOM05D001598 ORTHO05D002757 2.2e-26 123.2 190 44.2
CDE06G1877 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 2.9e-26 122.9 167 50.3
Ah.02g131210 Amaranthus hybridus HOM05D001645 ORTHO05D002757 3.8e-26 122.5 160 47.5
THA.LOC104805152 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 5.0e-26 122.1 164 46.3
ATR0564G259 Amborella trichopoda HOM05D001598 ORTHO05D002757 6.5e-26 121.7 157 48.4
BolC2t11190H Brassica oleracea HOM05D001598 ORTHO05D002757 8.4e-26 121.3 166 46.4
Manes.06G018600 Manihot esculenta HOM05D001598 ORTHO05D002757 8.4e-26 121.3 196 41.8
HPP92_016856 Vanilla planifolia HOM05D001598 ORTHO05D002757 8.4e-26 121.3 157 44.6
CDE06G1865 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 1.1e-25 120.9 173 49.7
VMungo1215G3305 Vigna mungo HOM05D001598 ORTHO05D002757 1.1e-25 120.9 199 41.2
C02p50980 Brassica napus HOM05D001598 ORTHO05D002757 1.4e-25 120.6 167 47.3
Sc11g0001820 Simmondsia chinensis HOM05D001598 ORTHO05D002757 1.9e-25 120.2 158 46.2
Eucgr.G02513 Eucalyptus grandis HOM05D001598 ORTHO05D002757 1.2e-24 117.5 162 46.3
Lj3C1039T11 Lonicera japonica HOM05D001598 ORTHO05D002757 2.1e-24 116.7 146 51.4
RcHm_v2.0_Chr4g0440071 Rosa chinensis HOM05D001598 ORTHO05D002757 2.3e-23 113.2 144 50.0
Os03g0379400 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 4.8e-21 105.5 158 41.8
AUR62005754 Chenopodium quinoa HOM05D001598 ORTHO05D002757 5.3e-20 102.1 151 44.4
CiPaw.05G137200 Carya illinoinensis HOM05D001598 ORTHO05D002757 1.0e-18 97.8 93 60.2
PGSC0003DMG400009618 Solanum tuberosum HOM05D001598 ORTHO05D002757 3.8e-18 95.9 94 60.6
HPP92_016914 Vanilla planifolia HOM05D001598 ORTHO05D002757 7.2e-17 91.7 141 41.1
Zm00001eb392280 Zea mays HOM05D001598 ORTHO05D002757 2.8e-13 79.7 163 37.4
FAN17G2100 Fragaria x ananassa HOM05D001598 ORTHO05D010176 5.3e-12 75.5 64 64.1
SEGI_27969 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 5.0e-10 68.9 186 31.2
Phvul.009G242000 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 2.5e-09 66.6 209 29.2
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 8.8e-07 58.2 213 26.8
arahy.Tifrunner.gnm1.ann1.F1G1DC Arachis hypogaea HOM05D001598 ORTHO05D002757 1.5e-06 57.4 61 45.9
CSS0038856 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 2.0e-06 57.0 61 45.9
CAN.G1156.51 Capsicum annuum HOM05D001598 ORTHO05D002757 2.0e-06 57.0 61 45.9
CDE06G0993 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 2.0e-06 57.0 198 28.8
Glyma.09G051800 Glycine max HOM05D001598 ORTHO05D002757 2.0e-06 57.0 165 33.3
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 2.0e-06 57.0 185 28.1
HPP92_015460 Vanilla planifolia HOM05D001598 ORTHO05D002757 2.0e-06 57.0 61 45.9
Atru.chr4.1342 Acer truncatum HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 45.9
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 45.9
Nitab4.5_0000496g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 45.9
Potri.007G133900 Populus trichocarpa HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 47.5
Sabra07G0108700 Salix brachista HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 47.5
Sabra07G0121000 Salix brachista HOM05D001598 ORTHO05D002757 2.6e-06 56.6 61 47.5
MD03G1229800 Malus domestica HOM05D001598 ORTHO05D002757 3.3e-06 56.2 61 45.9
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 3.3e-06 56.2 61 44.3
PSO063G3912 Papaver somniferum HOM05D001598 ORTHO05D002757 3.3e-06 56.2 65 44.6
Rhsim12G0173100 Rhododendron simsii HOM05D001598 ORTHO05D002757 3.3e-06 56.2 61 44.3
Aqoxy7G03836 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 45.9
Cfa015220 Carpinus fangiana HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
ClCG10G002790 Citrullus lanatus HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
Ciclev10020578m.g Citrus clementina HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
MELO3C013949.2 Cucumis melo HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 45.9
CsaV3_3G002830 Cucumis sativus L. HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
Dinv44166 Davidia involucrata HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
QL10p006125 Quercus lobata HOM05D001598 ORTHO05D002757 4.4e-06 55.8 177 28.2
Sed0000960 Sechium edule HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
GSVIVG01038094001 Vitis vinifera HOM05D001598 ORTHO05D002757 4.4e-06 55.8 61 44.3
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 5.7e-06 55.5 61 44.3
Eucgr.H00336 Eucalyptus grandis HOM05D001598 ORTHO05D002757 5.7e-06 55.5 65 43.1
Lj6g0023615 Lotus japonicus HOM05D001598 ORTHO05D002757 5.7e-06 55.5 61 44.3
MD10G1276700 Malus domestica HOM05D001598 ORTHO05D002757 5.7e-06 55.5 61 44.3
MD11G1250300 Malus domestica HOM05D001598 ORTHO05D002757 5.7e-06 55.5 61 44.3
Prupe.4G179500 Prunus persica HOM05D001598 ORTHO05D002757 5.7e-06 55.5 61 44.3
CANSAT80G0504 Cannabis sativa HOM05D001598 ORTHO05D002757 7.4e-06 55.1 61 44.3
CDE03G0379 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 7.4e-06 55.1 193 28.5
Lalb_Chr18g0052141 Lupinus albus HOM05D001598 ORTHO05D002757 7.4e-06 55.1 61 44.3
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 7.4e-06 55.1 61 44.3
Peaxi162Scf00007g01329 Petunia axillaris HOM05D001598 ORTHO05D002757 7.4e-06 55.1 61 44.3
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 7.4e-06 55.1 61 45.9
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 9.7e-06 54.7 60 45.0
MD00G1080400 Malus domestica HOM05D001598 ORTHO05D002757 9.7e-06 54.7 61 44.3
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 9.7e-06 54.7 198 25.8


User provided reference genes

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