Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.5e-65 252.7 127 100.0
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.5e-33 146.4 130 60.0
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.4e-33 145.2 125 61.6
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 9.9e-33 143.7 127 60.6
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 5.6e-28 127.9 141 50.4
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.3e-27 126.7 136 49.3
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.3e-27 126.7 127 55.1
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 6.2e-27 124.4 127 53.5
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 2.4e-26 122.5 143 49.0
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 5.3e-26 121.3 139 48.9
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 5.3e-26 121.3 139 48.9
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 5.3e-26 121.3 137 48.2
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 1.5e-25 119.8 137 48.2
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 2.0e-25 119.4 134 50.7
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.6e-25 119.0 112 55.4
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 1.0e-24 117.1 138 47.1
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 1.3e-24 116.7 114 53.5
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 2.2e-24 115.9 84 61.9
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 2.9e-24 115.5 139 46.8
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 6.5e-24 114.4 114 53.5
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 6.5e-24 114.4 84 61.9
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 6.5e-24 114.4 111 52.3
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 8.4e-24 114.0 84 61.9
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.1e-23 113.6 140 47.9
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.1e-23 113.6 139 46.8
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 1.4e-23 113.2 86 62.8
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.4e-23 113.2 85 62.4
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-23 112.8 139 47.5
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.9e-23 112.8 136 50.0
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 2.5e-23 112.5 133 48.9
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.5e-23 112.5 139 47.5
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.2e-23 111.7 92 56.5
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.2e-23 111.7 92 56.5
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 4.2e-23 111.7 92 56.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 4.2e-23 111.7 140 49.3
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 5.5e-23 111.3 140 47.9
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 7.1e-23 110.9 88 58.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 7.1e-23 110.9 139 46.0
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 9.3e-23 110.5 85 61.2
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 1.2e-22 110.2 83 56.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 1.6e-22 109.8 138 47.1
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 1.6e-22 109.8 116 47.4
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.6e-22 109.8 88 55.7
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 3.5e-22 108.6 88 55.7
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 4.6e-22 108.2 108 49.1
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.6e-22 108.2 135 45.2
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 7.9e-22 107.5 88 55.7
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 7.9e-22 107.5 111 50.5
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.0e-21 107.1 137 46.0
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.0e-21 107.1 143 44.8
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.0e-21 107.1 119 49.6
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.8e-21 106.3 111 48.6
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.8e-21 106.3 111 48.6
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.8e-21 106.3 80 60.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 1.8e-21 106.3 80 58.8
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 2.3e-21 105.9 132 47.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 2.3e-21 105.9 140 46.4
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.3e-21 105.9 112 48.2
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 3.9e-21 105.1 119 43.7
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 3.9e-21 105.1 139 48.2
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 5.1e-21 104.8 134 44.8
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.1e-21 104.8 123 48.0
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 6.7e-21 104.4 76 64.5
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.1e-20 103.6 121 48.8
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.5e-20 103.2 135 47.4
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.5e-20 103.2 126 49.2
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.5e-20 103.2 138 45.7
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 3.3e-20 102.1 115 51.3
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 3.3e-20 102.1 138 46.4
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 3.3e-20 102.1 95 51.6
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 3.3e-20 102.1 113 52.2
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 4.3e-20 101.7 95 51.6
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 5.7e-20 101.3 84 54.8
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 5.7e-20 101.3 84 56.0
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 7.4e-20 100.9 134 43.3
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 7.4e-20 100.9 125 43.2
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 9.7e-20 100.5 132 46.2
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 9.7e-20 100.5 132 46.2
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 9.7e-20 100.5 76 60.5
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.3e-19 100.1 109 45.9
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.3e-19 100.1 139 45.3
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-19 100.1 139 45.3
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.3e-19 100.1 123 44.7
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.6e-19 99.8 128 44.5
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.2e-19 99.4 132 45.5
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.2e-19 99.4 132 46.2
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 2.2e-19 99.4 134 42.5
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 2.8e-19 99.0 130 45.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 2.8e-19 99.0 130 45.4
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 2.8e-19 99.0 140 42.9
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.8e-19 99.0 83 56.6
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 3.7e-19 98.6 96 50.0
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 4.8e-19 98.2 138 43.5
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 8.2e-19 97.4 76 59.2
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 1.1e-18 97.1 139 40.3
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.4e-18 96.7 141 41.1
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 1.8e-18 96.3 109 44.0
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.8e-18 96.3 124 47.6
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 2.4e-18 95.9 98 52.0
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 4.1e-18 95.1 77 55.8
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 5.3e-18 94.7 128 43.8
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 5.3e-18 94.7 137 43.8
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 6.9e-18 94.4 141 41.1
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 1.5e-17 93.2 68 63.2
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.5e-17 93.2 138 43.5
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 4.5e-17 91.7 104 48.1
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 4.5e-17 91.7 79 55.7
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 2.9e-16 89.0 111 43.2
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 8.5e-16 87.4 117 42.7
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-15 87.0 73 60.3
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 1.2e-14 83.6 136 39.7
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 2.1e-14 82.8 83 48.2
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 5.1e-13 78.2 72 55.6
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 8.8e-13 77.4 105 45.7
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 3.3e-12 75.5 135 37.8
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 1.3e-11 73.6 80 45.0
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 2.8e-11 72.4 60 56.7
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 2.8e-11 72.4 114 42.1
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 6.3e-11 71.2 75 48.0
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.4e-10 70.1 111 38.7
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 3.1e-10 68.9 90 43.3
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 6.9e-10 67.8 67 44.8
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 9.1e-10 67.4 109 42.2
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 2.6e-09 65.9 109 42.2
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 4.5e-09 65.1 109 40.4
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 2.7e-06 55.8 55 50.9
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 4.7e-06 55.1 92 41.3
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 7.9e-06 54.3 64 37.5


User provided reference genes

Program Settings