Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 6.1e-88 327.4 159 100.0
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 7.7e-67 257.3 159 76.1
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.2e-64 250.0 159 75.5
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 7.2e-57 224.2 162 69.1
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.0e-55 220.3 160 66.2
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 3.0e-55 218.8 160 67.5
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 4.9e-53 211.5 160 64.4
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 4.9e-53 211.5 164 63.4
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 4.9e-53 211.5 161 65.8
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 1.4e-52 209.9 163 63.8
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 1.4e-52 209.9 166 63.9
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 2.4e-52 209.1 159 62.9
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 9.2e-52 207.2 162 65.4
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.2e-51 206.8 160 65.0
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 3.5e-51 205.3 163 62.6
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 5.9e-51 204.5 163 62.6
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 7.8e-51 204.1 159 62.3
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 7.8e-51 204.1 165 61.8
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 2.3e-50 202.6 163 62.6
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 2.3e-50 202.6 164 62.2
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 5.0e-50 201.4 163 61.3
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 6.6e-50 201.1 164 61.6
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 8.6e-50 200.7 166 60.8
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.5e-49 199.9 159 64.2
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 3.3e-49 198.7 163 63.2
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 2.8e-48 195.7 164 60.4
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 2.8e-48 195.7 160 62.5
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 3.6e-48 195.3 164 60.4
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 3.6e-48 195.3 160 61.9
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.7e-48 194.9 163 62.0
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 8.0e-48 194.1 162 59.3
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.4e-47 193.4 164 58.5
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 1.4e-47 193.4 169 57.4
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 1.8e-47 193.0 162 61.1
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.3e-47 192.6 163 60.1
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 3.1e-47 192.2 166 57.8
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 4.0e-47 191.8 166 60.8
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 4.0e-47 191.8 160 63.8
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 4.0e-47 191.8 158 59.5
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 4.0e-47 191.8 194 54.6
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 5.2e-47 191.4 161 59.6
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 6.8e-47 191.0 164 59.1
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 6.8e-47 191.0 161 59.6
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 8.9e-47 190.7 164 60.4
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 8.9e-47 190.7 161 59.6
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 1.2e-46 190.3 167 59.3
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.5e-46 189.9 161 60.2
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.5e-46 189.9 153 61.4
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 2.0e-46 189.5 162 58.0
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 7.5e-46 187.6 167 58.7
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 7.5e-46 187.6 164 59.8
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 6.6e-42 174.5 163 56.4
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 3.3e-41 172.2 159 56.0
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 2.1e-40 169.5 164 54.3
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 2.8e-40 169.1 127 67.7
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 3.6e-40 168.7 154 54.5
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 4.7e-40 168.3 176 48.9
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.1e-39 165.6 134 61.2
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 4.0e-39 165.2 143 58.0
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 5.2e-39 164.9 132 64.4
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.5e-38 163.3 186 50.0
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 5.8e-38 161.4 135 59.3
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 9.8e-38 160.6 136 59.6
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.3e-37 160.2 132 62.1
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 3.7e-37 158.7 162 53.1
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 6.4e-37 157.9 133 61.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 4.1e-36 155.2 137 60.6
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 1.3e-34 150.2 130 60.8
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.4e-31 140.2 159 46.5
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.5e-30 136.7 163 47.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 9.9e-30 134.0 131 54.2
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 1.6e-27 126.7 94 59.6
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 1.3e-26 123.6 105 57.1
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 4.7e-24 115.2 80 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 2.4e-23 112.8 188 36.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.0e-22 109.8 80 58.8
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 2.6e-22 109.4 163 36.8
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 2.9e-21 105.9 126 50.0
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 9.0e-15 84.3 84 58.3
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 5.8e-14 81.6 82 54.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 6.9e-07 58.2 94 33.0
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.9e-07 58.2 94 33.0
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.9e-07 58.2 94 33.0
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.5e-06 57.0 148 29.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.5e-06 57.0 75 37.3
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.6e-06 56.2 78 35.9
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 7.6e-06 54.7 96 32.3


User provided reference genes

Program Settings