Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.4e-150 536.2 264 100.0
SGA_v2.0_scaffold3389G54328 Striga asiatica HOM05D006818 ORTHO05D007177 2.5e-62 243.0 194 66.5
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.6e-21 107.5 70 77.1
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 3.8e-18 96.3 70 68.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 8.4e-18 95.1 70 68.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 4.2e-17 92.8 70 65.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 9.3e-17 91.7 70 67.1
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-16 91.3 70 64.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.0e-15 88.2 71 64.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.3e-15 87.8 74 60.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.8e-15 87.4 66 68.2
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.9e-15 86.3 64 68.8
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.9e-15 86.3 66 66.7
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 3.9e-15 86.3 70 62.9
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 3.9e-15 86.3 70 62.9
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.7e-15 85.1 63 68.3
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.1e-14 84.7 70 60.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.1e-14 84.7 70 61.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.9e-14 84.0 70 60.0
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.5e-14 83.6 71 63.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 7.4e-14 82.0 68 58.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.4e-14 82.0 65 63.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 9.6e-14 81.6 67 59.7
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.8e-13 80.1 68 66.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.7e-13 79.7 66 63.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 6.3e-13 79.0 67 58.2
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.3e-13 79.0 70 61.4
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 8.2e-13 78.6 65 61.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.2e-13 78.6 71 60.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 8.2e-13 78.6 66 62.1
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.4e-12 77.8 71 59.2
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-12 77.8 70 57.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.4e-12 77.8 64 60.9
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.4e-12 77.8 70 58.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.8e-12 77.4 67 61.2
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.4e-12 77.0 71 57.7
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.1e-12 76.6 68 55.9
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.1e-12 76.6 68 63.2
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.1e-12 76.6 68 63.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 6.9e-12 75.5 68 61.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 6.9e-12 75.5 68 61.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.2e-11 74.7 65 61.5
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.2e-11 74.7 63 65.1
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.5e-11 74.3 62 61.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.5e-11 74.3 70 52.9
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.5e-11 74.3 70 52.9
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-11 73.9 68 54.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.6e-11 73.6 63 63.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.6e-11 73.6 63 65.1
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.5e-11 72.8 68 52.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 5.9e-11 72.4 66 56.1
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 7.6e-11 72.0 70 52.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.0e-10 71.6 68 51.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.0e-10 71.6 62 58.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-10 71.6 66 54.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-10 71.6 66 54.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-10 71.6 66 54.5
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.0e-10 71.6 63 60.3
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.0e-10 71.6 68 57.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.3e-10 71.2 68 52.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-10 71.2 66 60.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-10 71.2 61 59.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.7e-10 70.9 67 59.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.7e-10 70.9 62 58.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-10 70.9 63 61.9
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.7e-10 70.9 66 56.1
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.7e-10 70.9 62 59.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.2e-10 70.5 63 61.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.9e-10 70.1 63 60.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.9e-10 70.1 66 54.5
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 3.8e-10 69.7 62 58.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 8.5e-10 68.6 63 58.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 8.5e-10 68.6 62 58.1
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.5e-10 68.6 65 50.8
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-09 68.2 67 52.2
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-09 68.2 59 61.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.4e-09 67.8 67 52.2
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.4e-09 67.8 62 54.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.9e-09 67.4 64 54.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.9e-09 67.4 66 51.5
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.9e-09 67.4 67 50.7
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-09 67.0 64 54.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.5e-09 67.0 68 51.5
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.2e-09 66.6 89 44.9
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 3.2e-09 66.6 66 53.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-09 66.6 64 54.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.2e-09 66.6 64 54.7
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 4.2e-09 66.2 65 53.8
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 4.2e-09 66.2 65 53.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.5e-09 65.9 65 56.9
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 5.5e-09 65.9 42 78.6
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 7.2e-09 65.5 67 55.2
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 7.2e-09 65.5 66 59.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 7.2e-09 65.5 69 50.7
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 9.3e-09 65.1 64 56.2
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 9.3e-09 65.1 68 50.0
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-08 64.7 64 56.2
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-08 64.7 64 56.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-08 64.7 64 56.2
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-08 64.7 64 56.2
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.2e-08 64.7 64 56.2
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.2e-08 64.7 73 53.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-08 64.7 65 55.4
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.6e-08 64.3 65 55.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.6e-08 64.3 65 55.4
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.6e-08 64.3 68 48.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.6e-08 64.3 63 57.1
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.1e-08 63.9 61 57.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.1e-08 63.9 61 52.5
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.7e-08 63.5 64 51.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.7e-08 63.5 65 53.8
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.6e-08 62.8 42 71.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 7.9e-08 62.0 66 51.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 7.9e-08 62.0 63 57.1
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-07 61.6 64 53.1
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-07 61.2 64 53.1
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-07 61.2 64 53.1
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-07 61.2 64 53.1
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.3e-07 61.2 61 49.2
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.8e-07 60.8 66 50.0
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-07 60.5 76 47.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-07 60.5 76 47.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.3e-07 60.5 61 47.5
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.3e-07 60.5 45 60.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 5.1e-07 59.3 65 50.8
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 5.1e-07 59.3 37 73.0
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 6.7e-07 58.9 42 66.7
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 8.7e-07 58.5 67 49.3
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 8.7e-07 58.5 64 51.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 8.7e-07 58.5 64 51.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 8.7e-07 58.5 90 43.3
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 1.5e-06 57.8 37 70.3
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.5e-06 57.8 37 70.3
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.9e-06 57.4 42 61.9
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.9e-06 57.4 63 46.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.9e-06 57.4 56 53.6
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.3e-06 56.6 70 41.4
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 4.3e-06 56.2 37 67.6
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.3e-06 56.2 65 50.8
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.3e-06 56.2 65 50.8
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 4.3e-06 56.2 50 58.0
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 4.3e-06 56.2 37 67.6
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 4.3e-06 56.2 37 67.6
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 5.7e-06 55.8 53 52.8
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 5.7e-06 55.8 37 67.6
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 5.7e-06 55.8 37 67.6
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 7.4e-06 55.5 68 45.6
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 7.4e-06 55.5 57 56.1
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 7.4e-06 55.5 57 56.1
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 7.4e-06 55.5 65 49.2
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 7.4e-06 55.5 57 56.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 7.4e-06 55.5 65 49.2
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 9.7e-06 55.1 47 57.4
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 9.7e-06 55.1 68 45.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 9.7e-06 55.1 68 45.6
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 9.7e-06 55.1 44 65.9
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 9.7e-06 55.1 37 64.9


User provided reference genes

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