Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.0e-237 823.5 413 100.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 7.8e-212 740.3 445 84.7
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 4.3e-202 708.0 413 84.7
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.1e-200 701.8 413 85.2
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.0e-195 686.8 413 81.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.3e-195 686.4 411 82.5
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.1e-194 683.3 415 82.7
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.1e-193 679.1 413 80.4
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 6.2e-193 677.6 413 80.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-192 676.8 413 80.1
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-192 676.4 413 80.4
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-192 676.4 413 80.1
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.4e-192 676.4 415 81.9
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.4e-192 676.4 413 80.1
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.8e-192 676.0 413 80.1
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.4e-191 671.8 412 80.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 7.6e-191 670.6 413 79.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.7e-190 669.5 414 80.4
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 3.8e-190 668.3 413 78.9
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.8e-190 668.3 414 80.9
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 6.4e-190 667.5 413 78.7
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.1e-189 666.8 412 80.3
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.2e-188 663.3 413 79.2
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.1e-188 662.5 410 78.5
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.5e-188 661.8 413 79.7
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 3.5e-188 661.8 415 79.5
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 78.7
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 77.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.8e-187 659.4 412 79.4
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.0e-187 658.7 413 78.2
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.9e-187 658.3 413 78.5
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 3.9e-187 658.3 411 78.3
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 4.3e-186 654.8 413 76.8
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 7.4e-186 654.1 413 77.0
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-185 653.3 413 77.2
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.1e-184 650.2 414 78.5
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.8e-184 649.4 415 77.6
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 6.9e-184 647.5 412 78.4
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 9.0e-184 647.1 411 75.9
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.2e-183 646.7 413 77.0
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.0e-183 646.0 413 76.5
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 7.6e-183 644.0 414 76.6
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.0e-182 643.7 456 72.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.0e-182 643.7 410 76.6
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.7e-182 642.9 413 77.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.9e-182 641.3 413 75.5
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.1e-181 640.2 413 76.5
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.9e-181 639.4 414 75.8
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.9e-181 639.4 413 76.5
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.9e-181 639.4 479 68.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 4.2e-181 638.3 413 75.3
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 9.3e-181 637.1 415 76.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.2e-180 636.7 413 75.8
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 5.1e-179 631.3 415 74.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.1e-179 631.3 413 75.3
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 6.7e-179 630.9 414 76.3
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 8.7e-179 630.6 410 75.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.5e-178 629.8 415 75.9
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.9e-178 629.4 415 75.9
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.5e-178 629.0 414 75.6
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.3e-177 626.7 413 74.6
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 415 76.1
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.8e-177 624.8 412 74.8
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.1e-176 623.6 417 75.1
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 4.1e-176 621.7 412 74.8
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 4.1e-176 621.7 417 74.1
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 5.3e-176 621.3 417 74.6
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 4.5e-175 618.2 418 73.7
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.0e-174 617.1 411 73.0
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 411 73.0
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.3e-174 616.7 411 73.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.2e-174 615.9 411 72.3
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.2e-174 615.9 415 73.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.2e-174 615.9 413 73.8
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 8.4e-174 614.0 415 73.7
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.1e-173 613.6 418 72.5
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.9e-173 612.8 411 73.2
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.9e-173 612.8 414 72.9
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.2e-173 610.9 413 72.6
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.6e-172 609.8 414 73.9
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 2.1e-172 609.4 413 72.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 2.1e-172 609.4 411 72.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 3.5e-172 608.6 418 72.0
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.5e-172 608.6 414 72.5
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.6e-172 608.2 411 72.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 6.1e-172 607.8 411 72.0
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.8e-171 606.3 411 73.0
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.9e-171 605.1 415 73.0
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 6.7e-171 604.4 413 71.7
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.5e-170 603.2 411 72.0
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.5e-170 602.4 413 72.6
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.3e-170 601.7 410 72.0
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 4.3e-170 601.7 409 72.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 5.7e-170 601.3 376 78.2
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 9.7e-170 600.5 411 71.3
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 9.7e-170 600.5 414 72.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 9.7e-170 600.5 414 72.0
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.6e-169 599.7 413 71.9
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.1e-168 597.0 509 63.3
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.1e-168 595.5 420 74.3
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.3e-168 594.7 413 71.2
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.5e-167 593.2 414 71.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.5e-167 593.2 411 71.0
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.6e-167 592.4 418 71.3
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.3e-166 590.1 411 71.0
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.8e-166 588.6 414 71.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.5e-166 587.4 414 71.0
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.5e-166 587.4 414 69.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.5e-165 585.9 414 70.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.2e-165 585.1 414 69.1
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 5.5e-165 584.7 403 73.4
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.2e-164 583.6 414 69.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.6e-164 583.2 467 64.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.8e-161 571.6 418 68.4
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.6e-156 555.4 410 67.6
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 6.1e-156 554.7 430 64.2
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 4.5e-151 538.5 350 76.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 6.7e-147 524.6 306 83.3
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 5.7e-146 521.5 410 62.9
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 7.5e-146 521.2 411 61.3
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.4e-138 495.7 333 73.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.8e-137 492.7 348 70.7
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 5.9e-135 485.0 419 61.1
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.3e-134 483.8 410 59.8
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.6e-132 476.9 330 71.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.8e-130 467.6 418 60.0
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 2.8e-129 466.1 418 59.6
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.7e-129 465.7 335 70.7
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-106 390.6 234 79.9
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.9e-105 386.3 243 77.0
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.7e-89 334.0 432 45.8
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.0e-75 285.0 392 44.1
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-74 284.3 181 76.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.4e-67 260.4 234 59.0
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 6.5e-65 252.3 329 43.8
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.8e-54 217.6 183 63.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.1e-48 198.4 113 86.7
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.4e-48 198.0 256 49.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.6e-37 160.6 219 42.9
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 5.3e-35 152.9 125 62.4
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 2.1e-31 141.0 81 84.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 7.5e-29 132.5 104 64.4
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 4.8e-28 129.8 84 70.2
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 5.0e-25 119.8 183 43.7
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.6e-23 114.8 109 57.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.6e-23 114.8 109 57.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 8.8e-22 109.0 90 61.1
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 7.5e-21 105.9 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 7.5e-21 105.9 74 66.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 3.7e-20 103.6 88 62.5
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.7e-20 103.6 83 62.7
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 4.8e-20 103.2 74 64.9
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 2.7e-18 97.4 73 63.0
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.2e-17 94.4 81 58.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.0e-14 85.5 66 59.1
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.6e-13 80.9 59 64.4
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 2.8e-12 77.4 65 53.8
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.2e-10 72.0 112 41.1
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.6e-10 71.6 112 40.2
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.6e-10 71.6 86 48.8


User provided reference genes

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