Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.1e-83 313.2 152 100.0
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.4e-81 305.4 152 96.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.0e-81 304.7 152 96.7
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 6.9e-81 303.9 152 96.7
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.9e-81 303.9 152 96.1
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 96.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 5.8e-80 300.8 152 94.7
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 5.8e-80 300.8 152 94.7
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.9e-80 300.1 152 95.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 9.9e-80 300.1 152 94.1
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 95.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 95.4
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.2e-79 298.9 152 94.7
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.9e-79 298.5 148 97.3
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.9e-79 298.5 152 94.7
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.8e-79 298.1 148 96.6
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.8e-79 298.1 148 96.6
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.7
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 93.4
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 93.4
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 6.4e-79 297.4 148 96.6
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 6.4e-79 297.4 152 94.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 152 94.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 152 94.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.1e-78 296.6 152 94.1
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.1e-78 296.6 152 93.4
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 95.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 92.8
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 93.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 92.8
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 5.5e-78 294.3 157 92.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 5.5e-78 294.3 148 95.3
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 5.5e-78 294.3 154 92.9
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 5.5e-78 294.3 148 95.3
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 7.1e-78 293.9 147 95.2
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.8
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.1
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.2e-77 293.1 144 97.9
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 144 97.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 146 94.5
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 146 94.5
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 91.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 92.1
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 93.4
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 92.6
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 4.6e-77 291.2 144 97.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 4.6e-77 291.2 148 93.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.6e-77 291.2 150 94.7
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 92.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.9e-77 290.4 147 93.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.0e-76 290.0 148 92.6
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 90.8
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.8
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 92.1
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.8e-76 289.3 145 95.9
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 90.1
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.3e-76 288.9 148 93.9
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 92.8
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 90.8
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 88.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 90.1
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.7e-76 287.3 148 93.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 8.7e-76 287.0 148 92.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 148 91.9
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 92.6
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 90.8
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 91.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 91.9
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.3e-75 285.0 148 92.6
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 91.9
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 91.2
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.6e-74 282.7 149 89.9
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 2.1e-74 282.3 149 91.3
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 2.1e-74 282.3 149 91.3
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 91.9
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 91.9
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 8.1e-74 280.4 151 88.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 90.6
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 90.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 89.9
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 89.1
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 5.3e-73 277.7 148 90.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 6.9e-73 277.3 152 88.2
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 147 89.1
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 147 89.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 7.6e-72 273.9 156 85.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.3e-71 273.1 145 88.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-71 272.3 157 86.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 8.4e-71 270.4 145 91.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 7.1e-70 267.3 140 90.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.2e-69 266.5 143 88.8
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-69 266.2 134 94.8
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 3.5e-69 265.0 132 94.7
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.3e-68 262.3 130 96.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 3.9e-68 261.5 134 94.0
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 5.1e-68 261.2 132 93.9
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 5.1e-68 261.2 132 94.7
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 6.7e-68 260.8 132 93.2
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 6.7e-68 260.8 132 93.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.5e-67 258.8 144 88.9
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 3.3e-67 258.5 135 91.1
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 9.6e-67 256.9 128 94.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.1e-66 255.8 134 92.5
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.8e-66 255.4 127 94.5
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.8e-66 255.4 127 94.5
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.8e-66 254.6 127 93.7
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.4e-65 253.1 132 91.7
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.8e-65 252.7 146 81.5
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 2.4e-65 252.3 128 93.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 2.4e-65 252.3 124 96.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-65 251.9 147 84.4
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 3.1e-65 251.9 152 82.9
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.1e-65 251.5 132 91.7
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.3e-65 251.1 132 89.4
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 6.9e-65 250.8 150 82.0
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 6.9e-65 250.8 150 82.0
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.2e-64 250.0 128 91.4
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.2e-64 250.0 128 92.2
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.5e-64 248.1 139 85.6
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 9.3e-62 240.4 144 75.0
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.2e-61 240.0 145 75.2
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.6e-58 229.6 151 72.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 8.2e-58 227.3 157 73.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.9e-54 216.1 187 60.4
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 8.8e-52 207.2 144 72.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.1e-51 206.8 116 84.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.6e-51 205.7 126 77.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 3.7e-50 201.8 103 95.1
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.1e-49 200.3 103 94.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 4.1e-49 198.4 103 93.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.0e-47 193.7 116 76.7
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-43 179.5 87 95.4
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 8.2e-42 174.1 115 80.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.5e-38 162.5 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.1e-37 159.5 79 91.1
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.1e-37 159.5 81 95.1
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.2e-36 154.8 140 61.4
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.4e-33 146.0 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 2.5e-30 136.0 74 81.1
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.7e-29 131.7 71 90.1
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.0e-28 128.6 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.0e-27 126.3 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.3e-26 120.9 77 77.9
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.5e-16 89.0 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.9e-15 85.9 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 55.4


User provided reference genes

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