Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.2e-179 630.9 319 100.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.7e-137 493.0 321 77.9
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 6.0e-135 484.6 321 76.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 6.6e-134 481.1 321 77.6
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.3e-118 430.3 321 69.5
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.7e-118 429.9 321 69.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.6e-117 424.9 321 66.4
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 9.6e-117 424.1 319 68.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.6e-116 423.3 321 67.3
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 6.2e-116 421.4 321 67.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-115 420.6 321 66.4
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.4e-115 420.2 321 67.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.0e-115 418.7 321 67.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.0e-114 416.4 325 67.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 5.4e-112 408.3 319 65.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 7.1e-112 407.9 333 64.3
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 9.3e-112 407.5 326 66.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.7e-111 406.0 320 66.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.7e-111 406.0 321 65.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.5e-111 405.6 322 65.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 6.0e-111 404.8 330 64.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 6.0e-111 404.8 324 67.3
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.0e-110 404.1 322 64.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.3e-110 403.7 321 63.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-110 403.7 323 66.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.3e-110 402.9 326 66.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.3e-110 402.9 337 63.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.1e-110 401.7 324 64.5
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.1e-110 401.7 322 65.2
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.5e-109 400.2 324 63.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.9e-109 399.8 323 65.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.5e-109 399.4 325 64.6
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.3e-109 398.7 320 63.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 9.6e-109 397.5 323 66.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.8e-108 396.0 319 63.9
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.8e-108 395.2 321 64.2
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 6.2e-108 394.8 324 64.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 5.3e-107 391.7 330 63.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 6.9e-107 391.3 320 62.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 9.0e-107 391.0 323 63.5
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.4e-106 389.0 320 62.5
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.4e-106 389.0 320 62.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.4e-106 389.0 325 62.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 4.5e-106 388.7 326 62.9
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.5e-106 388.7 320 62.8
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.8e-106 388.3 323 63.8
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.8e-106 388.3 326 62.6
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.6e-106 387.9 319 62.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.7e-105 386.7 330 62.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.9e-105 386.0 321 61.1
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 3.8e-105 385.6 321 61.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.8e-105 385.6 321 61.1
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 3.8e-105 385.6 322 63.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.8e-105 385.6 325 62.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.9e-105 385.2 398 54.8
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 8.4e-105 384.4 323 62.2
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.2e-104 382.5 318 61.3
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.2e-104 382.1 318 60.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 4.2e-104 382.1 324 62.7
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.4e-104 381.7 322 60.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.3e-104 380.9 321 60.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.2e-103 380.6 319 60.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.7e-103 379.4 318 61.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.5e-103 379.0 323 60.7
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.8e-102 376.7 321 63.2
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.3e-102 376.3 323 59.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.0e-102 375.9 323 61.0
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.9e-102 375.6 318 59.7
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.9e-101 373.2 323 63.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-101 372.9 322 60.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.3e-101 372.5 323 61.0
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.3e-101 372.1 321 58.3
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.3e-101 372.1 323 60.4
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 5.6e-101 371.7 318 60.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.6e-101 371.7 321 59.5
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.1e-100 369.8 325 60.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.8e-100 369.4 318 59.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.0e-99 365.5 321 58.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.8e-98 361.7 320 59.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 7.1e-96 354.8 324 59.6
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 9.3e-96 354.4 318 57.5
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 7.9e-95 351.3 319 58.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.7e-93 345.1 325 57.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.8e-92 342.8 325 57.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.4e-91 339.7 302 57.9
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.3e-85 318.9 281 59.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.7e-84 315.8 325 56.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 9.0e-83 311.2 329 53.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.0e-82 310.1 272 58.5
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.2e-81 306.6 323 54.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-80 303.5 363 51.2
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 2.7e-79 299.7 262 61.5
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.2e-76 290.0 255 59.6
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 2.2e-73 280.0 178 75.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 8.5e-73 278.1 375 43.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.1e-69 267.7 318 47.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.7e-55 219.9 209 58.9
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.3e-54 216.9 235 52.3
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 5.2e-54 215.7 218 54.1
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-43 181.0 109 78.9
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-43 180.3 109 79.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.3e-41 174.5 208 46.6
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.4e-38 164.5 333 35.1
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-36 157.1 172 53.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.9e-36 156.8 104 70.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-33 147.5 126 65.1
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-28 131.3 82 78.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.3e-28 128.6 82 74.4
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-24 117.5 145 49.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.6e-24 115.9 343 32.4
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.6e-23 114.4 97 54.6
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 1.6e-23 114.4 97 54.6
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-23 113.6 76 69.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-20 104.4 65 78.5
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-19 101.7 180 41.7
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-19 99.8 65 72.3
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.0e-18 95.9 83 51.8
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-15 88.2 71 59.2
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-14 84.0 92 52.2
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.3e-14 84.0 84 60.7
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-14 83.6 92 51.1
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.2e-14 82.8 143 38.5
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 6.8e-14 82.4 181 32.0
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 6.8e-14 82.4 55 72.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 6.8e-14 82.4 92 51.1
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.0e-13 80.9 182 31.9
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.6e-13 80.5 181 30.4
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.6e-13 80.5 181 31.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 2.6e-13 80.5 181 30.4
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.4e-13 80.1 181 30.9
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 4.4e-13 79.7 181 31.5
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 4.4e-13 79.7 181 30.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 5.8e-13 79.3 181 30.4
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 5.8e-13 79.3 173 29.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 7.6e-13 79.0 181 30.9
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 9.9e-13 78.6 181 30.4
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 9.9e-13 78.6 181 30.9
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.3e-12 78.2 181 30.4
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 2.2e-12 77.4 181 30.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 4.9e-12 76.3 181 29.8
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 6.4e-12 75.9 181 29.8
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.1e-11 75.1 181 29.8
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.1e-11 75.1 181 29.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.4e-11 74.7 181 29.3
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.4e-11 74.7 181 29.3
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.4e-11 74.7 181 29.3
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.4e-11 74.7 173 28.9
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 2.4e-11 73.9 181 29.8
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 5.4e-11 72.8 173 28.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.2e-10 71.6 193 28.5
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-10 71.2 108 42.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.9e-09 66.6 159 29.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.1e-08 65.1 166 30.1
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.5e-08 64.7 53 64.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.9e-08 64.3 184 27.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 5.6e-08 62.8 185 26.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 2.8e-07 60.5 210 27.6
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.4e-06 58.2 200 24.5
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 1.8e-06 57.8 46 63.0
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 2.4e-06 57.4 120 30.8


User provided reference genes

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