Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 1.8e-159 565.8 276 100.0
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 3.0e-127 458.8 227 96.9
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.6e-112 409.8 227 85.5
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.7e-109 399.8 242 81.8
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 1.8e-108 396.4 227 82.8
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 6.2e-104 381.3 227 78.0
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 2.3e-103 379.4 227 77.5
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.0e-102 376.3 227 78.4
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 2.0e-102 376.3 226 80.5
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 3.4e-102 375.6 222 79.7
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 7.5e-102 374.4 216 80.6
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.3e-101 373.6 225 77.3
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 1.3e-101 373.6 227 77.5
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 1.3e-101 373.6 216 81.5
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 3.7e-101 372.1 219 79.5
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 6.4e-101 371.3 219 80.8
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 6.4e-101 371.3 233 77.7
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 8.3e-101 370.9 219 78.5
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.9e-100 369.8 228 76.8
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 2.4e-100 369.4 217 79.7
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 4.1e-100 368.6 229 76.4
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.1e-100 368.6 226 77.9
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 5.4e-100 368.2 227 76.2
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 5.4e-100 368.2 241 74.3
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 9.2e-100 367.5 216 79.2
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 2.0e-99 366.3 227 75.8
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 3.5e-99 365.5 227 75.3
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 4.6e-99 365.2 228 75.9
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 6.0e-99 364.8 225 75.6
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 1.3e-98 363.6 219 77.6
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 2.3e-98 362.8 243 72.8
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 2.3e-98 362.8 219 77.6
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.0e-98 362.5 219 78.1
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.9e-98 362.1 227 75.8
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 3.9e-98 362.1 228 77.6
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 5.0e-98 361.7 219 76.3
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 6.6e-98 361.3 219 76.7
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 8.6e-98 360.9 219 76.3
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 8.6e-98 360.9 219 75.8
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 8.6e-98 360.9 242 72.7
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.1e-97 360.5 219 75.8
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.1e-97 360.5 219 75.8
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 1.5e-97 360.1 216 78.2
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 1.5e-97 360.1 218 78.0
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.9e-97 359.8 216 75.9
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.9e-97 359.8 216 75.9
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 2.5e-97 359.4 230 74.3
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 2.5e-97 359.4 219 75.3
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 4.3e-97 358.6 228 73.7
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 4.3e-97 358.6 228 73.7
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 4.3e-97 358.6 217 75.6
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 4.3e-97 358.6 219 76.7
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 4.3e-97 358.6 219 75.3
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 7.3e-97 357.8 216 76.9
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 7.3e-97 357.8 217 75.1
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 7.3e-97 357.8 217 76.5
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 7.3e-97 357.8 220 76.4
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 7.3e-97 357.8 216 77.3
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 9.5e-97 357.5 227 73.6
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 9.5e-97 357.5 220 76.4
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 9.5e-97 357.5 216 77.3
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 1.2e-96 357.1 216 76.9
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.2e-96 357.1 216 75.0
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 2.8e-96 355.9 219 74.4
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 2.8e-96 355.9 216 77.8
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 3.6e-96 355.5 219 74.4
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 4.7e-96 355.1 216 75.9
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 4.7e-96 355.1 219 74.9
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 6.2e-96 354.8 220 74.5
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 6.2e-96 354.8 219 74.0
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 8.1e-96 354.4 216 74.5
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 1.4e-95 353.6 216 74.5
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 1.4e-95 353.6 218 74.8
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 1.8e-95 353.2 216 77.3
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 3.1e-95 352.4 231 73.2
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 3.1e-95 352.4 216 76.4
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 4.0e-95 352.1 216 75.5
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 4.0e-95 352.1 220 74.1
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 5.2e-95 351.7 229 72.9
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 5.2e-95 351.7 216 76.4
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 6.8e-95 351.3 219 75.8
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 8.9e-95 350.9 217 74.7
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 8.9e-95 350.9 216 74.5
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 1.2e-94 350.5 204 81.9
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 1.5e-94 350.1 227 72.7
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.0e-94 349.7 219 74.4
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 2.6e-94 349.4 219 74.0
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 5.8e-94 348.2 221 74.2
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 1.3e-93 347.1 216 74.5
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 2.2e-93 346.3 216 73.1
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 4.9e-93 345.1 228 70.2
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.4e-93 344.7 230 71.3
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.4e-92 343.6 215 72.6
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 2.4e-92 342.8 216 73.1
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 4.1e-92 342.0 219 72.6
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.1e-92 341.3 219 72.6
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 7.1e-92 341.3 232 68.1
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 1.2e-91 340.5 216 72.7
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 1.6e-91 340.1 222 71.6
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 2.7e-91 339.3 228 68.9
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 4.6e-91 338.6 236 68.2
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.0e-91 338.2 216 73.1
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 6.6e-90 334.7 218 72.5
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 8.6e-90 334.3 229 69.0
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.5e-89 333.6 219 71.7
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 1.2e-88 330.5 218 71.6
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 3.6e-88 328.9 224 68.3
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 4.7e-88 328.6 216 72.2
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 2.6e-86 322.8 228 68.9
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.4e-86 322.4 228 68.9
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 7.6e-86 321.2 219 71.2
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 9.9e-86 320.9 216 69.0
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 3.8e-85 318.9 195 74.9
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.4e-85 318.2 212 70.8
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.1e-84 317.4 225 68.4
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 9.2e-84 314.3 227 65.6
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.6e-83 313.5 218 67.9
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 3.5e-83 312.4 188 77.1
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.0e-82 310.8 227 64.3
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 5.1e-82 308.5 225 65.8
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 2.5e-81 306.2 191 74.9
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 9.6e-81 304.3 188 74.5
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 3.1e-79 299.3 326 50.3
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 1.5e-78 297.0 227 59.9
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 4.4e-78 295.4 228 62.3
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.3e-77 293.9 326 49.1
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 2.9e-77 292.7 225 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 4.9e-77 292.0 195 68.7
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 1.7e-74 283.5 160 80.6
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 5.3e-71 271.9 219 62.1
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 4.5e-70 268.9 218 59.2
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 1.3e-69 267.3 228 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.7e-69 266.9 230 57.4
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.4e-68 263.8 143 84.6
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.2e-67 260.8 178 69.7
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.3e-66 257.3 156 76.3
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 4.0e-63 245.7 200 56.0
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.2e-62 244.2 216 55.6
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 2.1e-59 233.4 176 61.4
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 9.0e-55 218.0 231 47.6
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 2.6e-54 216.5 131 78.6
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 5.1e-50 202.2 228 48.7
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 1.5e-49 200.7 102 89.2
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 7.9e-43 178.3 177 51.4
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 2.6e-38 163.3 106 72.6
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 7.7e-38 161.8 178 47.2
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.6e-33 146.7 127 60.6
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 2.2e-32 143.7 120 61.7
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.5e-29 131.7 195 40.5
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 5.5e-28 129.0 100 67.0
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.4e-15 87.0 56 73.2
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.6e-14 84.3 104 48.1
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 4.5e-14 82.8 79 55.7
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 1.5e-12 77.8 49 67.3
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.7e-08 64.3 37 75.7
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 1.2e-06 58.2 31 83.9


User provided reference genes

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