Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16088 Striga asiatica HOM05D001502 ORTHO05D002950 3.4e-92 341.7 176 100.0
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 7.0e-45 184.5 200 57.5
SGA_v2.0_scaffold242G44254 Striga asiatica HOM05D001502 ORTHO05D002950 9.2e-45 184.1 138 76.1
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 2.3e-35 152.9 200 50.5
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 1.1e-29 134.0 193 46.6
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 3.5e-28 129.0 199 43.2
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 3.3e-26 122.5 206 40.8
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 9.6e-26 120.9 206 40.8
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.1e-25 119.8 211 39.8
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.1e-25 119.8 211 39.8
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 3.6e-25 119.0 214 38.3
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 6.2e-25 118.2 205 40.0
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.1e-24 117.5 210 41.4
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.4e-24 117.1 210 41.9
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 3.1e-24 115.9 210 40.5
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 3.1e-24 115.9 210 41.0
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 5.2e-24 115.2 197 40.6
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 6.9e-24 114.8 215 40.5
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 6.9e-24 114.8 209 38.3
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 9.0e-24 114.4 215 38.6
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.2e-23 114.0 195 40.5
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.2e-23 114.0 209 37.3
SGA_v2.0_scaffold6G03380 Striga asiatica HOM05D001502 ORTHO05D403056 1.2e-23 114.0 144 52.1
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 1.2e-23 114.0 214 38.8
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 2.0e-23 113.2 214 38.8
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 5.8e-23 111.7 215 39.1
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 7.6e-23 111.3 215 39.5
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 7.6e-23 111.3 215 38.1
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 9.9e-23 110.9 211 39.3
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 9.9e-23 110.9 217 35.0
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.3e-22 110.5 215 39.5
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 1.7e-22 110.2 216 34.7
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 2.2e-22 109.8 215 38.1
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.9e-22 109.4 215 36.7
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 3.8e-22 109.0 206 37.9
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 8.4e-22 107.8 216 34.3
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.1e-21 107.5 215 36.7
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.4e-21 107.1 194 42.3
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.4e-21 107.1 221 34.8
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 1.4e-21 107.1 207 34.8
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 1.9e-21 106.7 200 37.0
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 2.4e-21 106.3 208 37.0
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.4e-21 106.3 203 35.5
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.4e-21 106.3 203 35.5
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 5.4e-21 105.1 217 36.4
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 7.1e-21 104.8 203 35.0
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 9.3e-21 104.4 215 38.1
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 2.1e-20 103.2 217 35.5
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 3.5e-20 102.4 211 37.0
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 3.5e-20 102.4 211 37.0
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 4.6e-20 102.1 185 38.9
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 6.0e-20 101.7 211 35.1
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.0e-19 100.9 213 35.7
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 1.3e-19 100.5 206 35.9
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.7e-19 100.1 216 36.1
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.7e-19 100.1 206 34.5
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 2.3e-19 99.8 176 38.6
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.3e-19 99.8 211 36.0
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 3.0e-19 99.4 215 34.4
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 5.1e-19 98.6 215 34.9
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 8.7e-19 97.8 213 33.8
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 8.7e-19 97.8 214 33.6
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.1e-18 97.4 199 37.2
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.1e-18 97.4 216 34.7
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.1e-18 97.4 216 34.7
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.1e-18 97.4 216 34.7
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 1.1e-18 97.4 213 32.4
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 1.1e-18 97.4 216 35.6
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.5e-18 97.1 213 31.9
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 7.3e-18 94.7 214 35.0
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 9.6e-18 94.4 194 36.1
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 1.3e-17 94.0 188 36.2
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 2.1e-17 93.2 201 33.8
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 2.8e-17 92.8 213 33.3
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 3.6e-17 92.4 203 33.5
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 4.8e-17 92.0 218 34.9
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 4.8e-17 92.0 213 34.7
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 4.8e-17 92.0 214 31.3
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 4.8e-17 92.0 208 33.7
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 4.8e-17 92.0 214 30.8
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 8.1e-17 91.3 218 33.5
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 8.1e-17 91.3 199 35.7
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 8.1e-17 91.3 248 31.9
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 1.1e-16 90.9 215 32.6
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 1.1e-16 90.9 211 31.8
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.1e-16 90.9 213 31.9
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 2.4e-16 89.7 210 32.4
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 3.1e-16 89.4 210 36.2
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 3.1e-16 89.4 196 38.3
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 3.1e-16 89.4 214 31.8
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 5.3e-16 88.6 210 31.4
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 5.3e-16 88.6 214 30.8
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 5.3e-16 88.6 213 32.4
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 9.0e-16 87.8 206 32.0
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 1.2e-15 87.4 206 32.5
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 1.2e-15 87.4 196 31.1
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 1.2e-15 87.4 196 31.1
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.5e-15 87.0 205 31.7
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.5e-15 87.0 210 30.5
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 1.5e-15 87.0 215 31.6
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 2.0e-15 86.7 206 32.0
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.0e-15 86.7 188 33.5
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.0e-15 86.7 210 30.0
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 2.6e-15 86.3 199 37.7
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.6e-15 86.3 216 31.5
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 3.4e-15 85.9 203 32.0
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 3.4e-15 85.9 217 30.4
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 4.5e-15 85.5 210 30.0
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 4.5e-15 85.5 199 32.2
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 7.6e-15 84.7 188 33.5
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 9.9e-15 84.3 206 31.1
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 1.7e-14 83.6 215 31.2
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 1.7e-14 83.6 198 32.8
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 2.2e-14 83.2 202 30.2
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 2.2e-14 83.2 218 30.3
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 2.9e-14 82.8 214 31.8
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.8e-14 82.4 211 28.4
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 4.9e-14 82.0 210 29.0
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 6.4e-14 81.6 219 33.3
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 6.4e-14 81.6 216 31.9
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 8.4e-14 81.3 193 34.2
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.1e-13 80.9 213 29.1
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 1.9e-13 80.1 211 29.4
CAN.G774.28 Capsicum annuum HOM05D001502 ORTHO05D002950 1.9e-13 80.1 196 35.2
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 3.2e-13 79.3 123 41.5
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 3.2e-13 79.3 212 31.6
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 7.1e-13 78.2 208 29.8
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 7.1e-13 78.2 216 30.6
SGA_v2.0_scaffold242G44258 Striga asiatica HOM05D006491 ORTHO05D008412 9.3e-13 77.8 60 70.0
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 1.2e-12 77.4 191 30.4
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 1.6e-12 77.0 214 29.9
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 1.6e-12 77.0 129 38.8
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 2.1e-12 76.6 209 30.6
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 2.1e-12 76.6 216 29.6
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 2.1e-12 76.6 214 28.5
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 3.5e-12 75.9 215 29.8
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 6.0e-12 75.1 218 28.0
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 7.9e-12 74.7 215 29.8
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 1.3e-11 73.9 211 31.8
Zm00001eb341940 Zea mays HOM05D001502 ORTHO05D002950 1.8e-11 73.6 196 29.6
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 3.0e-11 72.8 212 28.8
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 5.1e-11 72.0 203 29.6
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 8.7e-11 71.2 95 44.2
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 8.7e-11 71.2 212 28.8
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 8.7e-11 71.2 215 28.8
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 8.7e-11 71.2 218 29.4
VMungo1215G0294 Vigna mungo HOM05D001502 ORTHO05D002950 3.3e-10 69.3 218 27.1
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 4.3e-10 68.9 219 27.9
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 5.6e-10 68.6 217 30.4
SEGI_09158 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.3e-09 67.4 226 25.7
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 2.1e-09 66.6 162 30.2
SEGI_03884 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 2.1e-09 66.6 229 26.2
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 4.0e-08 62.4 215 26.0
CAN.G18464.1 Capsicum annuum HOM05D001502 ORTHO05D002950 1.2e-07 60.8 123 39.8
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 1.2e-07 60.8 85 43.5
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 2.9e-06 56.2 167 31.7
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 3.8e-06 55.8 237 26.2
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 8.4e-06 54.7 243 26.3
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 8.4e-06 54.7 243 25.5


User provided reference genes

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