Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 0.0e+00 1129.4 561 100.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.5e-234 816.2 567 72.5
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 9.6e-197 690.6 591 62.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.6e-197 690.6 579 63.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.6e-196 689.9 483 71.2
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.7e-196 688.7 496 70.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.4e-195 686.8 587 64.2
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.4e-195 686.8 478 72.0
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.8e-195 686.4 578 63.7
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 6.9e-195 684.5 566 64.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 9.0e-195 684.1 495 70.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.5e-194 683.3 572 63.3
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 2.0e-194 682.9 478 71.8
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.0e-194 682.9 495 70.5
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.4e-194 682.2 498 69.3
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 3.4e-194 682.2 573 63.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.4e-194 682.2 572 64.0
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 3.4e-194 682.2 505 67.7
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.5e-194 681.8 497 69.2
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.0e-193 680.6 497 69.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-193 680.2 580 62.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.8e-193 678.7 582 62.2
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 8.4e-193 677.6 513 68.0
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.4e-192 676.8 474 71.3
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.4e-192 676.8 497 68.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.2e-192 675.6 476 71.2
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.6e-191 673.3 483 69.4
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.1e-191 672.9 491 68.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.1e-191 672.9 485 70.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.1e-191 672.9 473 70.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 2.7e-191 672.5 498 68.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.7e-191 672.5 484 69.6
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 3.6e-191 672.2 477 70.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.0e-190 670.6 474 69.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-190 670.2 483 69.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.3e-190 669.5 485 70.3
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.3e-190 669.5 497 67.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 3.0e-190 669.1 489 68.9
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.9e-190 668.7 489 69.1
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 5.1e-190 668.3 486 68.5
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.1e-189 667.2 489 67.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.3e-189 665.6 474 70.7
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 5.7e-189 664.8 474 69.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 7.4e-189 664.5 474 70.0
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.2e-188 662.9 496 67.5
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 2.8e-188 662.5 494 69.6
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 3.7e-188 662.1 476 69.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 6.3e-188 661.4 485 68.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 6.3e-188 661.4 476 69.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 8.2e-188 661.0 505 66.5
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.1e-187 660.6 473 71.5
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.4e-187 660.2 474 69.0
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.4e-187 659.4 460 71.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 5.3e-187 658.3 481 68.8
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 6.9e-187 657.9 484 69.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 9.0e-187 657.5 473 69.6
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.2e-186 657.1 497 66.2
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.5e-186 656.8 478 69.5
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.6e-186 656.0 478 69.2
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.4e-186 655.6 462 70.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-186 655.6 574 62.0
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 7.7e-186 654.4 481 67.8
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 7.7e-186 654.4 497 67.2
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.0e-185 654.1 474 70.7
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.3e-185 653.7 460 70.2
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 8.5e-185 651.0 463 70.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 8.5e-185 651.0 462 69.9
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.9e-184 649.8 563 61.8
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.5e-184 649.4 508 65.2
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 3.2e-184 649.0 534 62.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.2e-184 649.0 562 61.4
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.2e-184 648.7 499 65.7
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 5.5e-184 648.3 489 66.7
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 5.5e-184 648.3 484 66.9
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.6e-183 646.7 476 67.4
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 3.6e-183 645.6 478 68.6
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 4.6e-183 645.2 493 66.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 4.6e-183 645.2 466 70.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 4.6e-183 645.2 474 69.4
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.1e-183 644.8 499 66.7
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 7.9e-183 644.4 476 70.2
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 7.9e-183 644.4 490 66.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.8e-182 641.0 493 65.7
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.5e-181 640.2 481 66.9
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.0e-181 639.8 499 66.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 7.4e-181 637.9 493 66.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 9.7e-181 637.5 463 69.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 9.7e-181 637.5 463 69.1
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.7e-180 636.7 489 67.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.8e-180 636.0 476 68.3
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.7e-180 635.6 493 66.1
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 6.3e-180 634.8 493 66.1
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 3.1e-179 632.5 462 69.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.1e-179 632.5 461 67.9
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 3.1e-179 632.5 488 65.6
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.7e-177 626.7 464 67.9
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.9e-177 625.9 477 65.8
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.5e-176 622.9 464 69.0
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 3.2e-176 622.5 464 67.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 4.2e-176 622.1 488 65.0
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 5.5e-176 621.7 488 65.0
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 9.4e-176 620.9 464 66.8
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.6e-175 620.2 464 68.5
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.6e-175 620.2 464 68.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.6e-175 620.2 493 64.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.6e-175 619.0 476 64.1
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.1e-175 618.2 469 65.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 7.9e-175 617.8 469 66.3
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.4e-174 617.1 464 66.4
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 9.7e-173 610.9 464 67.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.1e-171 605.5 444 69.1
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.2e-169 599.7 446 67.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.4e-165 585.5 481 62.6
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.7e-162 574.7 560 55.9
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.2e-160 568.9 518 56.8
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 4.7e-159 565.5 467 60.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.0e-157 560.1 482 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.6e-157 559.7 469 59.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.8e-148 529.6 405 65.4
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 8.6e-145 518.1 436 63.3
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-140 503.8 354 73.4
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-138 497.7 337 74.8
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 4.6e-138 495.7 369 68.6
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 6.8e-134 481.9 359 68.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.3e-128 461.8 343 69.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 9.5e-128 461.5 478 52.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 5.8e-125 452.2 467 52.0
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.3e-121 441.0 474 51.1
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.1e-121 439.1 363 62.8
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.6e-117 425.2 343 64.7
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-116 424.1 398 60.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.5e-112 410.2 274 73.0
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.7e-106 390.2 465 48.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.1e-94 350.1 479 40.9
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-85 320.9 244 67.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.2e-79 298.9 476 38.9
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.1e-65 253.1 172 69.2
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.2e-59 233.8 399 35.6
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.6e-48 197.6 217 54.4
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.7e-45 186.0 115 68.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-42 177.9 126 71.4
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.0e-41 174.1 130 70.0
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.2e-40 172.2 115 67.0
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.6e-40 171.0 188 50.0
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.7e-34 150.2 89 71.9
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-33 147.9 120 55.0
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 3.3e-27 127.5 131 55.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 8.0e-26 122.9 109 58.7
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 6.8e-25 119.8 86 66.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 6.8e-25 119.8 86 66.3
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.2e-24 119.0 107 56.1
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.4e-24 117.5 107 56.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 3.4e-24 117.5 104 56.7
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-23 115.5 107 55.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 6.4e-23 113.2 78 65.4
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.0e-20 104.4 82 68.3
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 9.5e-19 99.4 72 66.7
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 9.5e-19 99.4 72 66.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 9.5e-19 99.4 72 66.7
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.9e-15 87.8 51 78.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 3.3e-11 74.3 260 26.9


User provided reference genes

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