Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 7.3e-278 959.9 478 100.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 1.4e-249 865.9 478 91.0
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 1.0e-231 806.6 478 85.1
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 9.0e-228 793.5 478 83.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 1.4e-220 769.6 480 81.2
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.4e-220 768.8 479 81.6
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 4.1e-220 768.1 481 81.3
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 9.0e-220 766.9 478 82.2
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 2.6e-219 765.4 478 81.6
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 4.5e-219 764.6 478 81.6
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 3.5e-216 755.0 481 80.7
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.8e-215 752.7 481 80.5
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 2.5e-214 748.8 481 80.7
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 5.7e-214 747.7 497 77.9
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.2e-213 745.7 479 80.6
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 6.3e-213 744.2 478 79.1
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 3.1e-212 741.9 480 78.5
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 5.9e-211 737.6 461 80.7
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 5.9e-211 737.6 459 80.6
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 7.7e-211 737.3 473 78.6
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.0e-210 736.9 478 79.1
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 1.7e-210 736.1 478 77.6
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 3.8e-210 734.9 502 75.9
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 5.0e-210 734.6 412 87.6
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 5.0e-210 734.6 478 78.7
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 5.0e-210 734.6 478 78.7
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 6.5e-210 734.2 479 78.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 1.4e-209 733.0 440 83.0
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 1.4e-209 733.0 465 78.3
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.5e-209 732.3 479 78.3
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 5.5e-209 731.1 453 80.4
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.7e-208 728.8 479 77.0
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.6e-208 728.4 479 76.6
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 3.6e-208 728.4 460 78.5
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 3.6e-208 728.4 443 81.7
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 6.1e-208 727.6 479 77.0
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 6.1e-208 727.6 440 82.0
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.8e-207 726.1 436 82.8
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 1.8e-207 726.1 440 82.0
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.0e-207 725.3 437 82.4
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 5.1e-207 724.5 444 81.3
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.1e-206 723.4 439 81.3
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.1e-206 723.4 479 76.4
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.1e-206 723.4 440 82.3
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.1e-206 723.4 465 77.4
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-206 723.0 441 81.0
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 2.0e-206 722.6 441 81.0
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 2.0e-206 722.6 440 81.6
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 2.5e-206 722.2 441 81.9
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 4.3e-206 721.5 447 81.2
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 2.2e-205 719.2 454 80.2
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 6.3e-205 717.6 453 80.4
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 8.2e-205 717.2 447 80.5
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-204 716.8 462 77.3
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 1.8e-204 716.1 440 80.7
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 6.9e-204 714.1 465 76.3
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 6.9e-204 714.1 479 77.2
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 9.1e-204 713.8 478 75.1
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.5e-203 713.0 411 84.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.5e-203 713.0 412 85.0
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.5e-203 713.0 462 76.8
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 2.0e-203 712.6 410 84.9
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 2.6e-203 712.2 437 80.8
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 2.6e-203 712.2 437 80.8
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 5.9e-203 711.1 462 76.8
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.9e-202 708.8 479 74.1
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.8e-202 708.4 479 73.9
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-201 706.8 462 76.4
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.4e-201 706.4 479 74.5
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 3.2e-201 705.3 478 75.1
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 3.2e-201 705.3 478 75.1
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.2e-201 705.3 462 76.2
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 5.5e-201 704.5 430 80.7
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 5.5e-201 704.5 448 78.6
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 7.2e-201 704.1 443 79.5
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 7.2e-201 704.1 478 75.1
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 7.2e-201 704.1 478 75.1
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 9.4e-201 703.7 449 78.2
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 9.4e-201 703.7 449 78.2
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 9.4e-201 703.7 490 74.3
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.2e-200 703.4 432 80.8
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.2e-200 703.4 482 74.7
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-200 703.0 432 80.8
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 1.6e-200 703.0 391 88.7
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 1.0e-199 700.3 432 80.6
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.0e-199 698.7 443 79.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 3.0e-199 698.7 453 77.0
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 3.9e-199 698.4 454 78.9
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 8.8e-199 697.2 439 80.2
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.5e-198 696.4 478 75.7
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 3.3e-198 695.3 443 78.6
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 3.3e-198 695.3 448 77.5
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 9.7e-198 693.7 516 70.2
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 2.2e-197 692.6 434 77.9
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 6.3e-197 691.0 433 80.1
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 6.3e-197 691.0 433 80.1
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.4e-196 689.9 426 81.0
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.0e-195 686.0 444 76.4
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 2.0e-195 686.0 434 78.6
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.6e-195 685.6 454 76.2
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.7e-192 674.9 384 86.7
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 3.3e-190 668.7 384 85.7
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 4.4e-190 668.3 413 80.9
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 2.2e-189 666.0 478 71.3
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 6.5e-186 654.4 440 76.8
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 5.7e-182 641.3 399 79.9
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 4.8e-181 638.3 449 71.9
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 6.3e-181 637.9 460 70.9
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 4.5e-179 631.7 465 71.0
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.7e-178 629.8 420 76.9
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 5.0e-178 628.2 547 63.1
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.5e-177 626.7 506 67.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 8.0e-176 620.9 479 68.3
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.0e-175 619.0 408 73.3
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 8.8e-175 617.5 413 73.1
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 8.3e-173 610.9 409 72.4
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 1.4e-172 610.1 411 73.0
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 5.6e-169 598.2 480 67.5
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.7e-157 560.1 358 77.9
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 4.1e-148 528.9 607 52.4
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 7.3e-145 518.1 427 58.5
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 5.6e-137 491.9 329 74.5
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.2e-136 488.4 306 80.4
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 6.6e-130 468.4 409 56.7
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.3e-122 444.1 368 61.1
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.3e-114 417.5 378 57.9
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.3e-109 401.0 276 73.2
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 8.4e-109 398.3 408 51.2
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 3.3e-105 386.3 406 52.2
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.4e-100 370.9 260 72.3
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 1.6e-83 314.3 172 90.1
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 5.7e-81 305.8 414 42.0
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.5e-78 296.6 188 79.8
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 4.0e-74 283.1 287 54.0
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.1e-60 238.4 357 40.1
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 7.5e-57 225.7 136 76.5
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.0e-46 191.0 423 33.6
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.0e-45 187.2 117 78.6
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.3e-29 135.2 72 86.1
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.2e-27 128.6 69 84.1
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 2.8e-27 127.5 81 81.5
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 3.6e-27 127.1 83 72.3
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 1.0e-21 109.0 100 61.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 2.3e-21 107.8 76 71.1
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 1.9e-20 104.8 66 83.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.9e-16 90.1 295 27.5
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 7.1e-15 86.3 59 74.6
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.1e-12 79.0 61 68.9
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 2.4e-10 71.2 46 67.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 6.4e-08 63.2 46 65.2
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 6.4e-08 63.2 46 65.2


User provided reference genes

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