Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold428G51517 Striga asiatica HOM05D001406 ORTHO05D002467 1.2e-58 229.6 115 100.0
SGA_v2.0_scaffold31G12605 Striga asiatica HOM05D000200 ORTHO05D000262 9.9e-40 166.8 96 89.6
Migut.G00149 Erythranthe guttata HOM05D001406 ORTHO05D002467 2.3e-28 129.0 99 69.7
MSTRG.10101 Avicennia marina HOM05D001406 ORTHO05D002467 8.4e-23 110.5 99 60.6
Oeu063358.1 Olea europaea HOM05D001406 ORTHO05D002467 2.5e-22 109.0 99 62.6
Oeu001106.1 Olea europaea HOM05D001406 ORTHO05D002467 2.1e-21 105.9 99 61.6
Hma1.2p1_1185F.1_g265010 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 3.0e-20 102.1 99 57.6
unitig_46.g18691 Utricularia gibba HOM05D001406 ORTHO05D002467 5.1e-20 101.3 99 54.5
Peaxi162Scf01533g00005 Petunia axillaris HOM05D001406 ORTHO05D002467 1.5e-19 99.8 102 54.9
Rhsim04G0223600 Rhododendron simsii HOM05D001406 ORTHO05D002467 5.7e-19 97.8 99 53.5
Rhsim09G0007200 Rhododendron simsii HOM05D001406 ORTHO05D002467 5.7e-19 97.8 99 53.5
Dinv29758 Davidia involucrata HOM05D001406 ORTHO05D002467 1.3e-18 96.7 99 52.5
arahy.Tifrunner.gnm1.ann1.GX02YE Arachis hypogaea HOM05D001406 ORTHO05D002467 4.8e-18 94.7 101 51.5
Cc03_g01770 Coffea canephora HOM05D001406 ORTHO05D002467 4.8e-18 94.7 102 53.9
PGSC0003DMG400004706 Solanum tuberosum HOM05D001406 ORTHO05D002467 4.8e-18 94.7 99 51.5
Nitab4.5_0000570g0180 Nicotiana tabacum HOM05D001406 ORTHO05D002467 6.3e-18 94.4 99 52.5
CSS0022037 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.1e-17 93.6 99 55.6
CSS0030868 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.1e-17 93.6 99 55.6
CAN.G484.38 Capsicum annuum HOM05D001406 ORTHO05D002467 1.1e-17 93.6 99 52.5
arahy.Tifrunner.gnm1.ann1.I6XRGW Arachis hypogaea HOM05D001406 ORTHO05D002467 1.4e-17 93.2 101 51.5
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.4e-17 93.2 99 51.5
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 1.4e-17 93.2 99 50.5
QL06p009582 Quercus lobata HOM05D001406 ORTHO05D002467 3.1e-17 92.0 99 52.5
Sopen12g034180 Solanum pennellii HOM05D001406 ORTHO05D002467 4.1e-17 91.7 99 50.5
Actinidia14293 Actinidia chinensis HOM05D001406 ORTHO05D002467 9.0e-17 90.5 102 52.0
COL.COLO4_13850 Corchorus olitorius HOM05D001406 ORTHO05D002467 1.5e-16 89.7 100 50.0
PGSC0003DMG400023537 Solanum tuberosum HOM05D001406 ORTHO05D002467 1.5e-16 89.7 99 54.5
Lj3C821T4 Lonicera japonica HOM05D001406 ORTHO05D002467 3.4e-16 88.6 100 50.0
Gohir.A02G049800 Gossypium hirsutum HOM05D001406 ORTHO05D002467 4.5e-16 88.2 99 47.5
DCAR_030522 Daucus carota HOM05D001406 ORTHO05D002467 5.9e-16 87.8 100 55.0
ECA240G3062 Erigeron canadensis HOM05D001406 ORTHO05D002467 7.7e-16 87.4 102 50.0
FvH4_4g18330 Fragaria vesca HOM05D001406 ORTHO05D002467 1.0e-15 87.0 99 48.5
FAN12G3491 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.0e-15 87.0 99 48.5
RcHm_v2.0_Chr4g0422801 Rosa chinensis HOM05D001406 ORTHO05D002467 1.7e-15 86.3 99 48.5
CAN.G449.37 Capsicum annuum HOM05D001406 ORTHO05D002467 2.2e-15 85.9 99 51.5
FAN17G1472 Fragaria x ananassa HOM05D001406 ORTHO05D002467 2.2e-15 85.9 99 47.5
Nn3g21477 Nelumbo nucifera HOM05D001406 ORTHO05D002467 2.2e-15 85.9 99 50.5
Lj3C821T6 Lonicera japonica HOM05D001406 ORTHO05D002467 2.9e-15 85.5 99 49.5
HanXRQChr13g0419941 Helianthus annuus HOM05D001406 ORTHO05D002467 3.8e-15 85.1 100 49.0
Nitab4.5_0000960g0010 Nicotiana tabacum HOM05D001406 ORTHO05D002467 3.8e-15 85.1 96 50.0
Sc13g0003390 Simmondsia chinensis HOM05D001406 ORTHO05D002467 3.8e-15 85.1 99 48.5
Ciclev10005299m.g Citrus clementina HOM05D001406 ORTHO05D002467 5.0e-15 84.7 99 45.5
Sopen05g032770 Solanum pennellii HOM05D001406 ORTHO05D002467 5.0e-15 84.7 99 52.5
FAN07G2894 Fragaria x ananassa HOM05D001406 ORTHO05D002467 6.5e-15 84.3 99 47.5
vmacro15226 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 6.5e-15 84.3 102 50.0
FAN12G1747 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.1e-14 83.6 99 47.5
Potri.010G013200 Populus trichocarpa HOM05D001406 ORTHO05D002467 1.1e-14 83.6 102 45.1
TAR370G0007 Trochodendron aralioides HOM05D001406 ORTHO05D002467 1.1e-14 83.6 99 49.5
Thecc.04G286200 Theobroma cacao HOM05D001406 ORTHO05D002467 2.5e-14 82.4 99 47.5
MD13G1167300 Malus domestica HOM05D001406 ORTHO05D002467 4.2e-14 81.6 103 48.5
Sed0005402 Sechium edule HOM05D001406 ORTHO05D002467 5.5e-14 81.3 99 46.5
Actinidia01478 Actinidia chinensis HOM05D001406 ORTHO05D002467 7.2e-14 80.9 99 49.5
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 9.4e-14 80.5 99 47.5
PGR031G2319 Punica granatum HOM05D001406 ORTHO05D002467 9.4e-14 80.5 99 45.5
Lj6P678T29 Lonicera japonica HOM05D001406 ORTHO05D002467 2.1e-13 79.3 99 47.5
MD16G1168100 Malus domestica HOM05D001406 ORTHO05D002467 2.7e-13 79.0 102 45.1
EL10Ac3g06614 Beta vulgaris HOM05D001406 ORTHO05D002467 4.6e-13 78.2 99 44.4
PSO210G0019 Papaver somniferum HOM05D001406 ORTHO05D002467 6.1e-13 77.8 99 48.5
PSO832G1852 Papaver somniferum HOM05D001406 ORTHO05D002467 6.1e-13 77.8 99 48.5
TWI09G0395 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 7.9e-13 77.4 103 41.7
Lsat_1_v5_gn_6_95721 Lactuca sativa HOM05D001406 ORTHO05D002467 1.4e-12 76.6 103 45.6
CSS0019087 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.8e-12 76.3 99 48.5
CSS0049598 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.8e-12 76.3 99 48.5
Hund24890 Selenicereus undatus HOM05D001406 ORTHO05D002467 1.8e-12 76.3 99 46.5
GSVIVG01035148001 Vitis vinifera HOM05D001406 ORTHO05D002467 3.0e-12 75.5 108 41.7
Sopen01g028380 Solanum pennellii HOM05D001406 ORTHO05D002467 3.9e-12 75.1 99 45.5
CANSAT78G0821 Cannabis sativa HOM05D001406 ORTHO05D002467 6.7e-12 74.3 99 44.4
Nitab4.5_0003949g0050 Nicotiana tabacum HOM05D001406 ORTHO05D002467 6.7e-12 74.3 102 46.1
Ah.13g074880 Amaranthus hybridus HOM05D001406 ORTHO05D002467 8.8e-12 73.9 99 45.5
Manes.03G196600 Manihot esculenta HOM05D001406 ORTHO05D002467 2.5e-11 72.4 99 45.5
Medtr2g436560 Medicago truncatula HOM05D001406 ORTHO05D002467 2.5e-11 72.4 99 42.4
Aqoxy5G00750 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 7.4e-11 70.9 99 41.4
HanXRQChr03g0089321 Helianthus annuus HOM05D001406 ORTHO05D002467 7.4e-11 70.9 103 44.7
Gohir.D02G054900 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.7e-10 69.7 99 40.4
AL8G22490 Arabidopsis lyrata HOM05D001406 ORTHO05D002467 2.8e-10 68.9 99 40.4
AT5G49060 Arabidopsis thaliana HOM05D001406 ORTHO05D002467 3.7e-10 68.6 99 37.4
Gorai.005G060800 Gossypium raimondii HOM05D001406 ORTHO05D002467 4.8e-10 68.2 99 39.4
BraA06t26774Z Brassica rapa HOM05D001406 ORTHO05D002467 6.3e-10 67.8 99 41.4
Lalb_Chr15g0083481 Lupinus albus HOM05D001406 ORTHO05D002467 6.3e-10 67.8 101 42.6
Eucgr.B01595 Eucalyptus grandis HOM05D001406 ORTHO05D002467 1.4e-09 66.6 99 37.4
Sp2g19430 Schrenkiella parvula HOM05D001406 ORTHO05D002467 1.4e-09 66.6 99 39.4
A06p38590 Brassica napus HOM05D001406 ORTHO05D002467 1.8e-09 66.2 99 40.4
Thhalv10004478m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 2.4e-09 65.9 100 43.0
Glyma.09G044000 Glycine max HOM05D001406 ORTHO05D002467 2.4e-09 65.9 97 40.2
Prupe.1G134600 Prunus persica HOM05D001406 ORTHO05D002467 2.4e-09 65.9 102 40.2
BolC7t44490H Brassica oleracea HOM05D001406 ORTHO05D002467 3.1e-09 65.5 99 39.4
PGSC0003DMG400011340 Solanum tuberosum HOM05D001406 ORTHO05D002467 3.1e-09 65.5 99 41.4
AUR62040368 Chenopodium quinoa HOM05D001406 ORTHO05D002467 5.3e-09 64.7 99 41.4
CARHR167530 Cardamine hirsuta HOM05D001406 ORTHO05D002467 6.9e-09 64.3 106 40.6
AUR62018081 Chenopodium quinoa HOM05D001406 ORTHO05D002467 6.9e-09 64.3 99 41.4
AL5G38880 Arabidopsis lyrata HOM05D001406 ORTHO05D002467 9.1e-09 63.9 105 38.1
TAR383G0949 Trochodendron aralioides HOM05D001406 ORTHO05D002467 1.2e-08 63.5 99 37.4
Atru.chr4.2869 Acer truncatum HOM05D001406 ORTHO05D002467 1.5e-08 63.2 100 40.0
HPP92_006922 Vanilla planifolia HOM05D001406 ORTHO05D002467 1.5e-08 63.2 99 38.4
ATR0796G008 Amborella trichopoda HOM05D001406 ORTHO05D002467 2.0e-08 62.8 98 41.8
Duzib212G0114 Durio zibethinus HOM05D001406 ORTHO05D002467 2.0e-08 62.8 99 41.4
Medtr2g436580 Medicago truncatula HOM05D001406 ORTHO05D002467 2.6e-08 62.4 101 35.6
ClCG06G005080 Citrullus lanatus HOM05D001406 ORTHO05D002467 3.4e-08 62.0 102 41.2
THA.LOC104802691 Tarenaya hassleriana HOM05D001406 ORTHO05D002467 3.4e-08 62.0 121 33.9
BcaC06g32351 Brassica carinata HOM05D001406 ORTHO05D002467 4.5e-08 61.6 68 47.1
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 4.5e-08 61.6 68 47.1
A09p50240 Brassica napus HOM05D001406 ORTHO05D002467 7.7e-08 60.8 103 38.8
BraA09t40474Z Brassica rapa HOM05D001406 ORTHO05D002467 7.7e-08 60.8 103 38.8
CiPaw.01G147600 Carya illinoinensis HOM05D001406 ORTHO05D002467 7.7e-08 60.8 99 41.4
MELO3C021325.2 Cucumis melo HOM05D001406 ORTHO05D002467 7.7e-08 60.8 99 39.4
Ah.04g153600 Amaranthus hybridus HOM05D001406 ORTHO05D002467 1.0e-07 60.5 101 37.6
A10p30620 Brassica napus HOM05D001406 ORTHO05D002467 1.0e-07 60.5 68 45.6
C09p71080 Brassica napus HOM05D001406 ORTHO05D002467 1.0e-07 60.5 68 45.6
BraA10t45102Z Brassica rapa HOM05D001406 ORTHO05D002467 1.3e-07 60.1 68 45.6
ClCG06G011010 Citrullus lanatus HOM05D001406 ORTHO05D002467 1.7e-07 59.7 116 37.1
Solyc01g066770.3 Solanum lycopersicum HOM05D001406 ORTHO05D002467 1.7e-07 59.7 99 40.4
PGSC0003DMG400014967 Solanum tuberosum HOM05D001406 ORTHO05D002467 1.7e-07 59.7 97 42.3
CsaV3_6G022320 Cucumis sativus L. HOM05D001406 ORTHO05D002467 2.2e-07 59.3 99 37.4
DCAR_014879 Daucus carota HOM05D001406 ORTHO05D002467 2.9e-07 58.9 103 37.9
Actinidia00012 Actinidia chinensis HOM05D001406 ORTHO05D002467 3.8e-07 58.5 76 46.1
CAN.G975.5 Capsicum annuum HOM05D001406 ORTHO05D002467 3.8e-07 58.5 120 34.2
Sp5g05260 Schrenkiella parvula HOM05D001406 ORTHO05D002467 6.5e-07 57.8 106 35.8
ATR0322G047 Amborella trichopoda HOM05D001406 ORTHO05D002467 8.5e-07 57.4 101 38.6
Aqoxy1G02547 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 8.5e-07 57.4 85 41.2
Aqoxy7G03718 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 8.5e-07 57.4 79 43.0
TWI63G0689 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 8.5e-07 57.4 105 38.1
Aa31LG10G12230 Aethionema arabicum HOM05D001406 ORTHO05D002467 1.1e-06 57.0 52 50.0
Carub.0008s0889 Capsella rubella HOM05D001406 ORTHO05D002467 1.1e-06 57.0 99 35.4
CARHR182660 Cardamine hirsuta HOM05D001406 ORTHO05D002467 1.1e-06 57.0 99 34.3
Lsat_1_v5_gn_7_45581 Lactuca sativa HOM05D001406 ORTHO05D002467 1.1e-06 57.0 90 36.7
Prupe.7G241200 Prunus persica HOM05D001406 ORTHO05D002467 1.1e-06 57.0 65 49.2
VMungo1309G0376 Vigna mungo HOM05D001406 ORTHO05D002467 1.1e-06 57.0 102 39.2
FAN28G0695 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.4e-06 56.6 67 49.3
Lalb_Chr07g0178911 Lupinus albus HOM05D001406 ORTHO05D002467 1.4e-06 56.6 104 35.6
Lalb_Chr12g0197871 Lupinus albus HOM05D001406 ORTHO05D002467 1.4e-06 56.6 102 36.3
Cfa003360 Carpinus fangiana HOM05D001406 ORTHO05D002467 1.9e-06 56.2 70 47.1
Nitab4.5_0001941g0060 Nicotiana tabacum HOM05D001406 ORTHO05D002467 1.9e-06 56.2 98 40.8
Psat1g154960 Pisum sativum HOM05D001406 ORTHO05D002467 1.9e-06 56.2 99 38.4
Potri.006G153700 Populus trichocarpa HOM05D001406 ORTHO05D002467 1.9e-06 56.2 66 45.5
Thhalv10006378m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 2.5e-06 55.8 62 48.4
Glyma.06G217000 Glycine max HOM05D001406 ORTHO05D002467 2.5e-06 55.8 51 52.9
PSO170G1851 Papaver somniferum HOM05D001406 ORTHO05D002467 2.5e-06 55.8 107 36.4
PSO455G0120 Papaver somniferum HOM05D001406 ORTHO05D002467 2.5e-06 55.8 107 36.4
FvH4_1g03490 Fragaria vesca HOM05D001406 ORTHO05D002467 3.2e-06 55.5 51 54.9
FAN19G3152 Fragaria x ananassa HOM05D001406 ORTHO05D002467 3.2e-06 55.5 51 54.9
Glyma.04G148200 Glycine max HOM05D001406 ORTHO05D002467 3.2e-06 55.5 51 51.0
Hma1.2p1_0018F.1_g012510 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 3.2e-06 55.5 104 33.7
Nn8g39432 Nelumbo nucifera HOM05D001406 ORTHO05D002467 3.2e-06 55.5 67 46.3
RcHm_v2.0_Chr2g0088701 Rosa chinensis HOM05D001406 ORTHO05D002467 3.2e-06 55.5 67 47.8
Sabra10G0008400 Salix brachista HOM05D001406 ORTHO05D002467 3.2e-06 55.5 99 36.4
SEGI_07828 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 3.2e-06 55.5 99 35.4
Aa31sc105G20 Aethionema arabicum HOM05D001406 ORTHO05D002467 4.2e-06 55.1 100 38.0
AT3G57340 Arabidopsis thaliana HOM05D001406 ORTHO05D002467 4.2e-06 55.1 65 46.2
arahy.Tifrunner.gnm1.ann1.PHM66I Arachis hypogaea HOM05D001406 ORTHO05D002467 4.2e-06 55.1 91 36.3
Manes.14G131700 Manihot esculenta HOM05D001406 ORTHO05D002467 4.2e-06 55.1 74 40.5
Phvul.009G248900 Phaseolus vulgaris HOM05D001406 ORTHO05D002467 4.2e-06 55.1 102 39.2
BcaC07g40055 Brassica carinata HOM05D001406 ORTHO05D002467 5.5e-06 54.7 104 36.5
Carub.0005s2419 Capsella rubella HOM05D001406 ORTHO05D002467 5.5e-06 54.7 106 34.9
Lalb_Chr13g0301921 Lupinus albus HOM05D001406 ORTHO05D002467 5.5e-06 54.7 78 42.3
TWI34G0992 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 5.5e-06 54.7 108 38.0
BcaC07g40054 Brassica carinata HOM05D001406 ORTHO05D002467 7.2e-06 54.3 62 46.8
BcaNung06180 Brassica carinata HOM05D001406 ORTHO05D002467 7.2e-06 54.3 48 54.2
C08p32730 Brassica napus HOM05D001406 ORTHO05D002467 7.2e-06 54.3 62 46.8
BolC8t50884H Brassica oleracea HOM05D001406 ORTHO05D002467 7.2e-06 54.3 62 46.8
Cpa.g.sc75.45 Carica papaya HOM05D001406 ORTHO05D002467 7.2e-06 54.3 110 34.5
CiPaw.04G170400 Carya illinoinensis HOM05D001406 ORTHO05D002467 7.2e-06 54.3 71 43.7
CiPaw.04G170600 Carya illinoinensis HOM05D001406 ORTHO05D002467 7.2e-06 54.3 115 33.9
Lsat_1_v5_gn_5_97200 Lactuca sativa HOM05D001406 ORTHO05D002467 7.2e-06 54.3 48 50.0
Lalb_Chr18g0051621 Lupinus albus HOM05D001406 ORTHO05D002467 7.2e-06 54.3 59 47.5
Sopen05g015780 Solanum pennellii HOM05D001406 ORTHO05D002467 7.2e-06 54.3 98 39.8
TWI32G0240 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 7.2e-06 54.3 64 46.9
Ca_01927_v3 Cicer arietinum L. HOM05D001406 ORTHO05D002467 9.4e-06 53.9 99 34.3
Dinv36534 Davidia involucrata HOM05D001406 ORTHO05D002467 9.4e-06 53.9 64 42.2
Eucgr.C01157 Eucalyptus grandis HOM05D001406 ORTHO05D002467 9.4e-06 53.9 113 37.2
FAN26G0469 Fragaria x ananassa HOM05D001406 ORTHO05D002467 9.4e-06 53.9 51 52.9
TAR636G2776 Trochodendron aralioides HOM05D001406 ORTHO05D002467 9.4e-06 53.9 104 36.5


User provided reference genes

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