Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.1e-202 709.9 391 100.0
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.0e-173 611.7 394 85.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 7.7e-169 597.4 394 83.5
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.1e-167 593.6 416 80.3
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 8.6e-160 567.4 394 81.0
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 79.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.2e-155 552.7 394 78.7
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 7.0e-154 547.7 395 79.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.2e-153 547.0 394 78.7
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.2e-153 547.0 394 78.9
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.3e-152 543.5 394 78.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.3e-152 543.5 395 79.0
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.7e-152 543.1 394 77.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.0e-152 541.6 394 77.7
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 76.9
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 76.9
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 77.9
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 9.5e-151 537.3 395 78.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 9.5e-151 537.3 394 77.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.2e-150 537.0 394 76.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.2e-150 537.0 394 74.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.6e-150 536.6 404 76.0
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 77.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.8e-150 535.8 394 74.4
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 8.1e-150 534.3 393 75.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.1e-149 532.3 394 75.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.1e-149 532.3 394 75.6
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 3.1e-149 532.3 394 77.4
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 5.2e-149 531.6 438 71.5
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 6.8e-149 531.2 395 77.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.8e-149 531.2 394 75.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 8.9e-149 530.8 393 74.0
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.2e-148 530.4 395 77.0
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.2e-148 530.4 394 73.9
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.5e-148 530.0 393 74.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.5e-148 530.0 394 76.4
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 76.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 4.4e-148 528.5 410 75.4
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 7.5e-148 527.7 394 73.1
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 9.8e-148 527.3 394 73.6
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.9e-147 525.8 394 75.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.7e-147 525.4 394 73.9
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 6.4e-147 524.6 394 75.4
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 8.3e-147 524.2 394 75.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.2e-146 522.3 395 75.9
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 5.4e-146 521.5 394 70.8
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.2e-145 520.4 397 76.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.5e-145 518.8 394 73.1
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 6.0e-145 518.1 394 72.6
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 6.6e-144 514.6 397 75.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.1e-143 513.8 395 75.4
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-143 513.8 394 69.0
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.5e-143 513.5 394 68.8
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 9.5e-143 510.8 394 70.1
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.8e-142 509.2 394 67.8
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 6.2e-142 508.1 392 72.4
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 8.1e-142 507.7 395 75.7
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 8.1e-142 507.7 396 67.4
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.4e-141 506.9 395 75.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.8e-141 506.5 394 68.3
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.8e-141 506.5 391 74.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 5.2e-141 505.0 394 68.5
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 5.2e-141 505.0 394 74.4
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.2e-140 503.8 391 73.9
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.0e-140 503.1 391 74.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 7.6e-140 501.1 393 66.2
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 9.9e-140 500.7 394 66.2
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.7e-139 500.0 394 68.8
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.7e-139 500.0 392 74.7
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-139 499.2 395 67.6
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.9e-139 499.2 397 72.5
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 3.7e-139 498.8 395 67.8
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.1e-138 497.3 394 74.6
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-138 496.1 395 67.3
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-138 496.1 395 67.3
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 9.2e-138 494.2 400 67.0
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.6e-137 493.4 370 75.9
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.6e-137 493.4 395 72.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.1e-137 493.0 394 64.0
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.7e-137 492.7 378 72.0
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 3.0e-136 489.2 393 72.0
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.5e-135 486.9 391 71.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 9.6e-135 484.2 402 71.4
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 4.7e-134 481.9 391 71.6
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 8.1e-134 481.1 406 70.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.4e-133 480.3 395 72.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.2e-132 477.2 370 73.5
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 3.4e-132 475.7 378 66.9
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 5.6e-127 458.4 394 67.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 5.6e-127 458.4 426 65.3
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 2.8e-126 456.1 399 67.7
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 3.8e-123 445.7 391 62.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 6.4e-123 444.9 405 61.7
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.4e-123 444.5 358 66.8
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.6e-120 434.9 394 68.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.4e-117 427.2 369 69.6
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 7.6e-108 394.8 379 58.8
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 8.7e-104 381.3 394 53.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 8.2e-102 374.8 289 68.5
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 7.6e-100 368.2 395 52.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 8.2e-94 348.2 289 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 6.5e-91 338.6 402 49.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.1e-90 337.8 399 49.1
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.1e-81 307.0 245 65.3
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 6.1e-81 305.4 392 49.0
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 3.3e-79 299.7 328 61.3
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 3.8e-75 286.2 375 47.7
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.5e-75 285.4 294 54.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 4.1e-69 266.2 389 51.9
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.8e-64 250.8 301 50.5
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.2e-60 238.0 290 51.0
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.9e-58 230.7 182 64.3
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 5.5e-58 229.2 182 63.7
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 9.2e-53 211.8 540 32.2
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.0e-52 210.7 153 75.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.1e-49 200.7 422 32.7
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 5.7e-47 192.6 165 60.6
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 3.5e-44 183.3 122 76.2
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.3e-43 180.6 416 32.9
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 6.2e-41 172.6 125 73.6
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 5.2e-40 169.5 391 31.2
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 2.0e-36 157.5 206 47.6
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.6e-36 156.4 92 84.8
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.3e-32 144.1 165 51.5
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 6.4e-30 136.0 88 81.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 8.3e-30 135.6 71 81.7
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.4e-29 134.8 125 63.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 7.3e-26 122.5 81 75.3
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.1e-25 120.9 112 56.2
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.2e-25 119.4 88 68.2
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 9.9e-23 112.1 130 62.3
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 5.4e-21 106.3 121 49.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.7e-19 101.3 96 57.3
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 8.6e-19 99.0 150 44.0
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.6e-17 94.7 148 39.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.8e-17 94.0 50 78.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 4.0e-16 90.1 46 95.7
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.9e-16 89.0 49 73.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.2e-15 88.6 80 62.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.4e-13 81.6 51 80.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.9e-11 73.6 44 81.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.5e-10 71.6 74 52.7
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.3e-10 70.1 38 89.5
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 1.3e-09 68.6 35 94.3
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-08 64.3 96 43.8


User provided reference genes

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