Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.3e-108 396.4 199 100.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 7.1e-94 347.4 195 89.2
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 9.9e-88 327.0 189 87.3
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 9.9e-88 327.0 189 87.3
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 9.9e-88 327.0 189 87.3
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 9.9e-88 327.0 189 87.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.7e-87 326.2 190 87.9
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.9e-86 322.8 192 87.0
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.0e-84 317.0 192 85.9
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.0e-84 317.0 189 86.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 6.7e-84 314.3 191 85.9
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 9.6e-83 310.5 191 83.8
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 9.6e-83 310.5 191 83.8
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 2.1e-82 309.3 192 82.3
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 2.1e-82 309.3 192 82.3
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-82 308.9 192 82.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-82 308.9 192 82.8
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 6.2e-82 307.8 191 84.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 2.4e-81 305.8 193 82.4
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-81 304.3 191 84.3
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-81 304.3 191 84.3
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-81 304.3 191 84.3
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-81 304.3 191 84.3
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-80 303.1 191 84.3
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-80 303.1 191 84.3
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-80 303.1 191 84.3
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.5e-80 303.1 191 84.3
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.5e-80 303.1 191 84.3
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 3.4e-80 302.0 192 82.3
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 4.5e-80 301.6 191 83.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.0e-79 300.4 194 82.0
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-79 300.4 191 83.8
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-79 300.4 191 83.8
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.2e-79 299.3 196 80.6
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.2e-79 299.3 196 80.6
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.2e-79 299.3 191 82.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 4.9e-79 298.1 191 83.2
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 4.9e-79 298.1 191 83.2
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 4.9e-79 298.1 191 83.2
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.5e-79 297.7 191 82.7
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.5e-79 297.7 191 82.7
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.5e-79 297.7 191 82.7
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 4.2e-78 295.0 180 84.4
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.6e-77 293.1 194 80.9
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.1e-77 292.7 191 82.2
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.1e-77 292.7 191 82.2
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 3.5e-77 292.0 188 83.0
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 4.6e-77 291.6 203 79.8
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.0e-76 290.4 191 81.2
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.0e-76 290.4 180 83.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.0e-76 288.9 183 82.5
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.3e-74 283.5 163 88.3
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.1e-73 278.5 193 78.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.9e-72 274.6 192 75.0
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 7.6e-72 274.2 189 78.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.3e-71 273.5 191 77.0
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 2.9e-71 272.3 192 77.1
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 6.5e-71 271.2 193 76.7
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 3.9e-68 261.9 164 84.8
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.5e-67 260.0 190 72.6
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.2e-66 256.1 191 73.8
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 1.3e-63 246.9 165 81.2
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.7e-63 246.5 162 81.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.5e-62 242.7 168 79.2
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.2e-62 242.3 176 76.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 5.3e-57 224.9 168 73.8
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 2.9e-55 219.2 156 76.3
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-50 203.4 159 69.8
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.2e-50 203.0 191 56.5
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 8.2e-50 201.1 137 78.8
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.5e-48 195.7 139 73.4
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 6.5e-47 191.4 186 60.2
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 8.5e-47 191.0 123 79.7
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 8.5e-47 191.0 141 75.2
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 4.0e-44 182.2 186 58.1
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.0e-44 182.2 186 58.1
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.2e-43 180.6 186 57.5
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.2e-43 180.6 186 57.5
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.5e-43 180.3 189 55.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 5.7e-43 178.3 187 58.3
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-38 164.1 177 55.4
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 2.3e-36 156.4 119 72.3
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 5.7e-35 151.8 82 89.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.3e-34 150.6 112 72.3
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 2.8e-34 149.4 81 91.4
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 4.1e-33 145.6 70 98.6
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.5e-32 142.5 118 68.6
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.7e-32 141.4 118 68.6
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-31 140.6 112 66.1
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.7e-31 140.2 68 97.1
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.7e-31 140.2 68 97.1
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 3.8e-31 139.0 74 89.2
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 5.5e-30 135.2 70 92.9
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 4.7e-29 132.1 75 86.7
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 4.0e-28 129.0 70 85.7
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.6e-27 126.3 94 72.3
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.8e-26 122.9 111 62.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.9e-26 122.1 117 62.4
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.3e-26 121.7 79 74.7
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.1e-25 119.4 117 61.5
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.4e-25 118.6 69 81.2
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-23 114.0 70 78.6
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.3e-22 109.4 79 70.9
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.3e-22 109.0 65 76.9
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 5.6e-22 108.6 186 37.1
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-21 107.5 65 78.5
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.6e-21 107.1 61 83.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.8e-20 101.7 65 70.8
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.7e-18 97.1 52 86.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.0e-15 86.3 49 81.6
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-13 80.9 75 62.7
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.8e-13 79.7 84 56.0
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 6.2e-13 78.6 56 66.1
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.2e-13 78.6 47 78.7
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-12 76.3 46 76.1
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 4.0e-12 75.9 61 65.6
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.9e-12 74.7 68 58.8
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 9.8e-11 71.2 69 60.9
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.9e-10 68.9 36 88.9
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.6e-08 63.9 53 69.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.6e-08 63.9 31 100.0
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.3e-07 60.8 65 58.5
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 3.9e-07 59.3 33 75.8
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 1.1e-06 57.8 30 83.3
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-06 57.4 41 68.3


User provided reference genes

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