Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold414G51212 Striga asiatica HOM05D001678 ORTHO05D001698 3.2e-110 401.7 203 100.0
SGA_v2.0_scaffold46G17365 Striga asiatica HOM05D001678 ORTHO05D001698 3.5e-72 275.4 179 81.0
SGA_v2.0_scaffold296G47542 Striga asiatica HOM05D001678 ORTHO05D001698 6.8e-68 261.2 176 77.8
SGA_v2.0_scaffold3280G54305 Striga asiatica HOM05D001678 ORTHO05D001698 1.4e-65 253.4 149 86.6
SGA_v2.0_scaffold68G22949 Striga asiatica HOM05D001678 ORTHO05D001698 6.2e-53 211.5 177 66.1
SGA_v2.0_scaffold97G29236 Striga asiatica HOM05D001678 ORTHO05D001698 8.1e-37 157.9 98 81.6
Oeu035952.1 Olea europaea HOM05D001678 ORTHO05D001698 5.5e-33 145.2 189 48.1
SGA_v2.0_scaffold180G39663 Striga asiatica HOM05D001678 ORTHO05D001698 7.4e-30 134.8 95 73.7
Oeu029512.1 Olea europaea HOM05D001678 ORTHO05D001698 9.6e-30 134.4 184 44.6
Oeu043769.1 Olea europaea HOM05D001574 ORTHO05D001698 2.6e-27 126.3 168 47.0
SGA_v2.0_scaffold172G38953 Striga asiatica HOM05D000077 ORTHO05D005617 4.5e-27 125.6 149 55.0
SGA_v2.0_scaffold25G11062 Striga asiatica HOM05D001678 ORTHO05D001698 2.9e-26 122.9 183 44.8
SGA_v2.0_scaffold27G11443 Striga asiatica HOM05D001678 ORTHO05D001698 4.2e-25 119.0 182 44.5
SGA_v2.0_scaffold68G22889 Striga asiatica HOM05D001678 ORTHO05D001698 4.2e-25 119.0 182 44.5
SGA_v2.0_scaffold2614G54162 Striga asiatica HOM05D001678 ORTHO05D001698 2.7e-24 116.3 182 44.5
SGA_v2.0_scaffold1090G53835 Striga asiatica HOM05D001678 ORTHO05D001698 6.7e-23 111.7 182 42.9
Oeu061131.1 Olea europaea HOM05D001678 ORTHO05D001698 6.3e-21 105.1 180 38.9
SGA_v2.0_scaffold177G39408 Striga asiatica HOM05D001678 ORTHO05D001698 2.4e-20 103.2 182 39.6
Oeu004532.1 Olea europaea HOM05D001678 ORTHO05D001698 1.0e-18 97.8 185 37.3
Oeu048642.1 Olea europaea HOM05D001678 ORTHO05D001698 3.0e-15 86.3 88 51.1
Atru.chr6.779 Acer truncatum HOM05D001678 ORTHO05D001698 5.1e-15 85.5 183 35.5
Prupe.4G168300 Prunus persica HOM05D001678 ORTHO05D001698 8.8e-15 84.7 198 34.3
Prupe.1G170700 Prunus persica HOM05D001678 ORTHO05D001698 3.7e-13 79.3 192 33.3
SGA_v2.0_scaffold612G53189 Striga asiatica HOM05D001678 ORTHO05D001698 1.8e-12 77.0 143 42.0
Oeu041480.1 Olea europaea HOM05D001678 ORTHO05D001698 9.1e-12 74.7 76 55.3
Oeu059447.1 Olea europaea HOM05D001678 ORTHO05D001698 1.2e-11 74.3 77 53.2
Atru.chr2.502 Acer truncatum HOM05D001678 ORTHO05D001698 7.7e-11 71.6 136 37.5
Oeu015820.2 Olea europaea HOM05D001678 ORTHO05D001698 1.3e-10 70.9 77 51.9
DCAR_017789 Daucus carota HOM05D001678 ORTHO05D001698 1.9e-09 67.0 161 29.8
Prupe.3G105400 Prunus persica HOM05D001678 ORTHO05D001698 4.2e-09 65.9 196 29.1
DCAR_007692 Daucus carota HOM05D001678 ORTHO05D001698 3.6e-08 62.8 161 29.2
FAN08G3647 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.6e-08 62.8 192 28.6
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 6.1e-08 62.0 166 31.9
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 7.9e-08 61.6 182 31.9
FvH4_6g24700 Fragaria vesca HOM05D001678 ORTHO05D001698 1.4e-07 60.8 192 28.1
Lj6A398T11 Lonicera japonica HOM05D001678 ORTHO05D001698 1.4e-07 60.8 194 29.9
RcHm_v2.0_Chr6g0281401 Rosa chinensis HOM05D001678 ORTHO05D001698 1.4e-07 60.8 194 28.9
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.8e-07 60.5 192 28.1
FAN14G3339 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.8e-07 60.5 202 25.7
Lj2A433T12 Lonicera japonica HOM05D001678 ORTHO05D001698 2.3e-07 60.1 182 32.4
RcHm_v2.0_Chr7g0220391 Rosa chinensis HOM05D001678 ORTHO05D001698 2.3e-07 60.1 161 30.4
FAN12G1326 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.0e-07 59.7 195 28.7
Lj3C1037T5 Lonicera japonica HOM05D001678 ORTHO05D001698 3.0e-07 59.7 191 29.8
Glyma.11G167500 Glycine max HOM05D001678 ORTHO05D001698 5.1e-07 58.9 200 29.5
FvH4_2g33311 Fragaria vesca HOM05D001678 ORTHO05D001698 6.7e-07 58.5 193 27.5
RcHm_v2.0_Chr4g0409291 Rosa chinensis HOM05D001678 ORTHO05D001698 6.7e-07 58.5 194 27.8
Glyma.07G133600 Glycine max HOM05D001678 ORTHO05D001698 1.1e-06 57.8 198 30.3
FvH4_6g20420 Fragaria vesca HOM05D000034 ORTHO05D001698 1.5e-06 57.4 195 25.6
SalBow8G3237 Salvia bowleyana HOM05D001678 ORTHO05D001698 1.5e-06 57.4 186 28.0
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-06 56.6 203 25.1
FAN24G2506 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.6e-06 56.6 193 26.9
Glyma.14G219200 Glycine max HOM05D001678 ORTHO05D001698 3.3e-06 56.2 203 29.6
Glyma.01G126100 Glycine max HOM05D001678 ORTHO05D001698 4.4e-06 55.8 204 28.4
FAN03G1731 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.7e-06 55.5 179 29.6
Glyma.20G169100 Glycine max HOM05D001678 ORTHO05D001698 5.7e-06 55.5 200 28.5
Prupe.7G010100 Prunus persica HOM05D001678 ORTHO05D001698 5.7e-06 55.5 196 29.6
SalBow7G3019 Salvia bowleyana HOM05D010254 ORTHO05D015184 9.7e-06 54.7 148 26.4


User provided reference genes

Program Settings