Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 0.0e+00 1277.7 675 100.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.0e-201 706.4 693 60.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 3.0e-192 676.0 681 59.6
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 6.6e-184 648.3 652 55.4
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 3.4e-148 529.6 584 53.1
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 1.0e-147 528.1 581 52.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.7e-147 527.3 625 50.4
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 4.5e-140 502.7 614 47.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.9e-139 500.0 636 48.4
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 5.0e-139 499.2 700 47.6
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.1e-135 488.0 649 45.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 5.7e-135 485.7 583 48.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 7.4e-135 485.3 895 37.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.3e-134 484.6 632 46.2
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.8e-133 480.7 729 43.6
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 3.1e-133 479.9 566 48.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 9.1e-133 478.4 632 46.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.9e-132 475.7 632 45.7
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.0e-131 474.9 672 45.1
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.5e-130 470.3 611 45.2
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 2.7e-129 466.8 683 43.6
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 6.1e-129 465.7 639 45.2
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 1.0e-128 464.9 562 48.6
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 3.0e-128 463.4 572 47.2
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.1e-127 461.5 615 46.0
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.1e-127 461.5 565 47.6
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.0e-127 460.7 610 45.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 8.2e-126 455.3 565 46.9
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 8.2e-126 455.3 559 48.3
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.4e-125 454.5 543 48.3
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 9.1e-125 451.8 575 46.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 2.0e-124 450.7 555 47.7
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.0e-123 448.4 642 43.6
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.3e-123 448.0 620 44.5
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.8e-123 446.4 692 44.7
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 3.8e-123 446.4 624 44.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 8.5e-123 445.3 630 44.8
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.1e-122 444.9 676 43.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.4e-122 444.5 635 44.1
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 5.5e-122 442.6 634 44.3
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.4e-122 441.8 603 45.3
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.2e-121 441.4 587 45.8
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.7e-121 440.3 606 46.0
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 3.6e-121 439.9 605 45.6
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.6e-121 439.9 568 46.0
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.1e-121 439.1 594 45.5
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.4e-120 438.0 599 45.7
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.4e-120 438.0 655 44.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 3.0e-120 436.8 661 41.9
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.9e-120 436.4 628 43.2
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.6e-119 433.7 568 45.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.7e-119 432.6 560 46.2
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.4e-119 432.2 605 46.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.3e-118 431.4 581 45.4
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.3e-118 431.4 621 44.1
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.8e-118 430.3 635 41.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.7e-118 429.9 571 45.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.1e-117 428.3 563 45.3
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.1e-117 428.3 563 45.3
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.1e-117 428.3 662 41.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.1e-117 426.4 649 43.6
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.0e-116 424.1 678 40.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 3.5e-116 423.3 574 46.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.5e-116 422.9 705 40.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 4.5e-116 422.9 590 43.6
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 7.7e-116 422.2 648 41.7
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 7.7e-116 422.2 547 46.3
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.5e-115 419.1 744 39.1
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-114 418.3 646 42.1
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.6e-113 414.5 570 45.1
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.4e-112 411.4 654 40.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 3.0e-112 410.2 713 39.6
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.2e-112 409.5 577 45.6
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.3e-110 404.8 633 42.3
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 4.8e-110 402.9 655 41.2
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 8.2e-110 402.1 657 41.7
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 3.1e-109 400.2 634 42.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 4.1e-109 399.8 677 40.2
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 5.3e-109 399.4 702 39.0
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 7.0e-109 399.1 645 41.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 2.5e-106 390.6 681 38.3
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 9.4e-106 388.7 719 37.1
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.8e-104 384.4 603 39.5
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.0e-103 380.9 466 49.4
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.6e-103 380.6 688 37.9
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.7e-103 379.4 686 39.1
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 9.8e-103 378.6 603 39.3
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.7e-102 377.9 627 39.7
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.7e-102 376.7 470 50.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.1e-101 375.2 672 39.6
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-101 374.8 747 36.3
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 5.4e-101 372.9 697 35.9
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-99 367.9 712 36.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.7e-92 344.0 677 37.1
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.7e-92 344.0 471 46.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 7.8e-92 342.4 561 38.3
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.5e-90 338.2 451 45.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.8e-88 331.3 282 61.3
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.9e-86 323.2 759 31.9
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 5.9e-84 316.2 670 35.4
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.6e-76 290.0 187 74.3
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 5.0e-75 286.6 752 32.0
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.1e-73 279.3 240 61.2
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 8.9e-72 275.8 234 59.8
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.6e-65 255.0 556 34.5
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 4.7e-65 253.4 613 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.1e-64 250.8 566 34.5
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-63 248.8 556 34.2
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.4e-61 241.9 221 56.1
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.2e-57 226.5 555 33.0
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.1e-56 224.2 197 61.4
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.6e-51 206.5 203 54.2
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.4e-45 188.0 211 49.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.3e-43 182.2 185 50.3
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.8e-40 171.8 230 42.6
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 6.4e-38 163.3 201 50.2
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.8e-33 147.1 146 54.8
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 5.3e-32 143.7 230 41.7
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.1e-29 136.0 208 38.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.0e-27 129.4 200 39.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 3.0e-27 127.9 166 47.6
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 9.7e-26 122.9 196 39.8
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 9.7e-26 122.9 196 39.8
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-25 121.3 135 48.1
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.9e-23 113.6 355 28.7
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.5e-18 99.0 162 38.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.3e-18 97.4 100 50.0
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 6.3e-17 93.6 140 39.3
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 5.3e-16 90.5 134 41.8
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.4e-13 82.4 59 67.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.6e-12 79.0 105 43.8
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 6.1e-12 77.0 48 72.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.0e-11 76.3 80 45.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.1e-11 73.9 137 35.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.3e-10 71.2 49 69.4
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 9.7e-10 69.7 110 36.4
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.8e-09 67.4 148 33.8
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.3e-09 67.0 59 50.8
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.2e-09 66.6 170 31.2
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.8e-08 65.5 103 38.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.1e-08 64.7 134 32.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 5.3e-08 63.9 145 34.5
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 7.0e-08 63.5 56 60.7
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 9.1e-08 63.2 76 44.7
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.5e-07 62.4 293 27.0
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.6e-07 61.6 122 34.4
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.6e-07 61.6 293 27.0
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 5.9e-07 60.5 123 33.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.0e-06 59.7 122 32.0
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.0e-06 59.7 163 28.8
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.0e-06 59.7 138 34.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.7e-06 58.9 122 35.2
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.2e-06 58.5 123 33.3
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 2.2e-06 58.5 143 35.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.8e-06 57.8 117 34.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.8e-06 57.8 341 25.2
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 8.5e-06 56.6 229 27.9
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 8.5e-06 56.6 133 33.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 8.5e-06 56.6 295 26.4


User provided reference genes

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