Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15447 Striga asiatica HOM05D003364 ORTHO05D003795 1.5e-66 256.1 135 100.0
MSTRG.5787 Avicennia marina HOM05D003364 ORTHO05D003795 4.9e-38 161.4 128 68.0
SalBow3G4042 Salvia bowleyana HOM05D003364 ORTHO05D003795 3.5e-36 155.2 103 78.6
Migut.J00474 Erythranthe guttata HOM05D003364 ORTHO05D003795 1.1e-34 150.2 128 66.4
Migut.J00476 Erythranthe guttata HOM05D003364 ORTHO05D003795 2.5e-34 149.1 128 66.4
Migut.F01371 Erythranthe guttata HOM05D003364 ORTHO05D003795 9.6e-34 147.1 128 64.8
CSS0048678 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 8.1e-33 144.1 114 66.7
Dinv37357 Davidia involucrata HOM05D003364 ORTHO05D003795 1.4e-32 143.3 114 68.4
AUR62030232 Chenopodium quinoa HOM05D003364 ORTHO05D003795 8.9e-32 140.6 114 62.3
vmacro07356 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 8.9e-32 140.6 134 54.5
GSVIVG01033713001 Vitis vinifera HOM05D003364 ORTHO05D003795 8.9e-32 140.6 114 64.0
Cc06_g04780 Coffea canephora HOM05D003364 ORTHO05D003795 3.4e-31 138.7 128 60.9
CiPaw.10G002500 Carya illinoinensis HOM05D003364 ORTHO05D003795 4.4e-31 138.3 114 66.7
Dinv35835 Davidia involucrata HOM05D003364 ORTHO05D003795 5.8e-31 137.9 128 61.7
CSS0050150 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 1.7e-30 136.3 114 61.4
TAR633G2316 Trochodendron aralioides HOM05D003364 ORTHO05D003795 1.7e-30 136.3 114 63.2
Nitab4.5_0005208g0010 Nicotiana tabacum HOM05D003364 ORTHO05D003795 2.2e-30 136.0 114 65.8
Thecc.05G075500 Theobroma cacao HOM05D003364 ORTHO05D003795 2.9e-30 135.6 128 60.2
Manes.09G048862 Manihot esculenta HOM05D003364 ORTHO05D003795 1.1e-29 133.7 128 57.8
CiPaw.09G005100 Carya illinoinensis HOM05D003364 ORTHO05D003795 2.4e-29 132.5 111 62.2
QL07p041392 Quercus lobata HOM05D003364 ORTHO05D003795 3.2e-29 132.1 114 64.9
Lj3A995G63 Lonicera japonica HOM05D003364 ORTHO05D003795 5.4e-29 131.3 114 64.9
Nitab4.5_0009839g0030 Nicotiana tabacum HOM05D003364 ORTHO05D003795 9.3e-29 130.6 114 64.9
DCAR_020798 Daucus carota HOM05D003364 ORTHO05D003795 2.1e-28 129.4 133 54.1
Nn6g35170 Nelumbo nucifera HOM05D003364 ORTHO05D003795 2.1e-28 129.4 138 54.3
Sc20g0005750 Simmondsia chinensis HOM05D003364 ORTHO05D003795 2.7e-28 129.0 114 61.4
Duzib128G0277 Durio zibethinus HOM05D003364 ORTHO05D003795 4.6e-28 128.3 127 57.5
Gohir.A04G068400 Gossypium hirsutum HOM05D003364 ORTHO05D003795 4.6e-28 128.3 134 53.7
Duzib106G1154 Durio zibethinus HOM05D003364 ORTHO05D003795 6.0e-28 127.9 134 53.7
Peaxi162Scf00110g00816 Petunia axillaris HOM05D003364 ORTHO05D003795 6.0e-28 127.9 105 68.6
TAR369G0566 Trochodendron aralioides HOM05D003364 ORTHO05D003795 7.8e-28 127.5 114 57.0
Nitab4.5_0000725g0070 Nicotiana tabacum HOM05D003364 ORTHO05D003795 1.3e-27 126.7 128 57.0
TWI77G0900 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 1.3e-27 126.7 114 62.3
COL.COLO4_22254 Corchorus olitorius HOM05D003364 ORTHO05D003795 1.7e-27 126.3 114 64.0
Gohir.D04G106900 Gossypium hirsutum HOM05D003364 ORTHO05D003795 3.0e-27 125.6 134 53.0
Gorai.009G411000 Gossypium raimondii HOM05D003364 ORTHO05D003795 3.0e-27 125.6 134 53.0
Oeu031866.1 Olea europaea HOM05D003364 ORTHO05D003795 3.0e-27 125.6 103 69.9
Haze_19478 Corylus avellana HOM05D003364 ORTHO05D003795 3.9e-27 125.2 114 63.2
Duzib093G1696 Durio zibethinus HOM05D003364 ORTHO05D003795 3.9e-27 125.2 128 57.8
EL10As10g23959 Beta vulgaris HOM05D003364 ORTHO05D003795 6.6e-27 124.4 107 61.7
Potri.016G097000 Populus trichocarpa HOM05D003364 ORTHO05D003795 6.6e-27 124.4 115 62.6
Gohir.D11G342100 Gossypium hirsutum HOM05D003364 ORTHO05D003795 8.7e-27 124.0 134 53.0
Gorai.007G372100 Gossypium raimondii HOM05D003364 ORTHO05D003795 8.7e-27 124.0 134 53.0
Manes.08G015900 Manihot esculenta HOM05D003364 ORTHO05D003795 8.7e-27 124.0 132 52.3
Ciclev10009355m.g Citrus clementina HOM05D003364 ORTHO05D003795 1.1e-26 123.6 134 53.7
Gohir.A11G323000 Gossypium hirsutum HOM05D003364 ORTHO05D003795 9.6e-26 120.6 134 51.5
TWI74G0085 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 9.6e-26 120.6 114 61.4
Lj1A203T55 Lonicera japonica HOM05D003364 ORTHO05D003795 1.6e-25 119.8 127 55.1
Oeu045244.1 Olea europaea HOM05D003364 ORTHO05D003795 1.6e-25 119.8 107 64.5
PGSC0003DMG400008590 Solanum tuberosum HOM05D003364 ORTHO05D003795 2.1e-25 119.4 131 51.1
AUR62040195 Chenopodium quinoa HOM05D003364 ORTHO05D003795 2.8e-25 119.0 128 50.8
Prupe.7G123000 Prunus persica HOM05D003364 ORTHO05D003795 2.8e-25 119.0 115 58.3
MD12G1102900 Malus domestica HOM05D003364 ORTHO05D003795 6.2e-25 117.9 115 57.4
MD14G1097000 Malus domestica HOM05D003364 ORTHO05D003795 8.1e-25 117.5 111 56.8
QL07p041377 Quercus lobata HOM05D003364 ORTHO05D003795 8.1e-25 117.5 100 65.0
EL10Ac7g16703 Beta vulgaris HOM05D003364 ORTHO05D003795 1.4e-24 116.7 121 52.1
HanXRQChr01g0019311 Helianthus annuus HOM05D003364 ORTHO05D003795 2.4e-24 115.9 114 64.9
Oeu040563.2 Olea europaea HOM05D003364 ORTHO05D003795 3.1e-24 115.5 113 60.2
Sc02g0001390 Simmondsia chinensis HOM05D003364 ORTHO05D003795 4.0e-24 115.2 114 57.9
Rhsim04G0138800 Rhododendron simsii HOM05D003364 ORTHO05D003795 5.3e-24 114.8 107 56.1
Potri.006G119200 Populus trichocarpa HOM05D003364 ORTHO05D003795 1.5e-23 113.2 118 60.2
Nn2g13901 Nelumbo nucifera HOM05D003364 ORTHO05D003795 2.0e-23 112.8 116 57.8
Hund12309 Selenicereus undatus HOM05D003364 ORTHO05D003795 4.5e-23 111.7 126 49.2
Aqoxy2G01564 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 5.8e-23 111.3 116 57.8
vmacro08805 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 5.8e-23 111.3 116 50.0
HanXRQChr11g0345961 Helianthus annuus HOM05D003364 ORTHO05D003795 7.6e-23 110.9 114 60.5
Sed0022654 Sechium edule HOM05D003364 ORTHO05D003795 7.6e-23 110.9 129 53.5
Sabra06G0093800 Salix brachista HOM05D003364 ORTHO05D003795 1.7e-22 109.8 117 57.3
unitig_22.g5108 Utricularia gibba HOM05D003364 ORTHO05D003795 1.7e-22 109.8 124 55.6
Cpa.g.sc5.126 Carica papaya HOM05D003364 ORTHO05D003795 2.2e-22 109.4 115 60.9
AUR62042710 Chenopodium quinoa HOM05D003364 ORTHO05D003795 2.2e-22 109.4 128 49.2
CAN.G541.25 Capsicum annuum HOM05D003364 ORTHO05D003795 6.4e-22 107.8 111 57.7
PGR142G3973 Punica granatum HOM05D003364 ORTHO05D003795 6.4e-22 107.8 134 49.3
Solyc10g085810.2 Solanum lycopersicum HOM05D003364 ORTHO05D003795 1.1e-21 107.1 131 47.3
Sopen10g035210 Solanum pennellii HOM05D003364 ORTHO05D003795 1.1e-21 107.1 131 47.3
arahy.Tifrunner.gnm1.ann1.PZQ5IT Arachis hypogaea HOM05D003364 ORTHO05D003795 1.4e-21 106.7 112 60.7
MELO3C009407.2 Cucumis melo HOM05D003364 ORTHO05D003795 1.9e-21 106.3 114 57.0
CsaV3_3G036470 Cucumis sativus L. HOM05D003364 ORTHO05D003795 2.4e-21 105.9 114 57.0
Eucgr.A01593 Eucalyptus grandis HOM05D003364 ORTHO05D003795 2.4e-21 105.9 114 54.4
arahy.Tifrunner.gnm1.ann1.URL2CG Arachis hypogaea HOM05D003364 ORTHO05D003795 3.2e-21 105.5 126 54.8
Lalb_Chr02g0155361 Lupinus albus HOM05D003364 ORTHO05D003795 4.2e-21 105.1 131 52.7
Solyc10g083780.1 Solanum lycopersicum HOM05D003364 ORTHO05D003795 5.4e-21 104.8 113 54.9
Sopen10g033230 Solanum pennellii HOM05D003364 ORTHO05D003795 5.4e-21 104.8 113 54.9
PGSC0003DMG400028179 Solanum tuberosum HOM05D003364 ORTHO05D003795 5.4e-21 104.8 112 54.5
Glyma.03G188100 Glycine max HOM05D003364 ORTHO05D003795 9.3e-21 104.0 126 54.0
Hma1.2p1_0137F.1_g062430 Hydrangea macrophylla HOM05D003364 ORTHO05D003795 9.3e-21 104.0 99 62.6
AL5G34000 Arabidopsis lyrata HOM05D003364 ORTHO05D003795 1.2e-20 103.6 113 58.4
THA.LOC104818582 Tarenaya hassleriana HOM05D003364 ORTHO05D003795 1.2e-20 103.6 132 47.7
ECA248G1326 Erigeron canadensis HOM05D003364 ORTHO05D003795 1.6e-20 103.2 128 53.9
VMungo1383G1043 Vigna mungo HOM05D003364 ORTHO05D003795 1.6e-20 103.2 126 56.3
Aa31LG10G8290 Aethionema arabicum HOM05D003364 ORTHO05D003795 2.7e-20 102.4 111 55.0
ClCG10G019650 Citrullus lanatus HOM05D003364 ORTHO05D003795 2.7e-20 102.4 102 60.8
CAN.G729.4 Capsicum annuum HOM05D003364 ORTHO05D003795 3.5e-20 102.1 130 46.9
Glyma.19G188300 Glycine max HOM05D003364 ORTHO05D003795 4.6e-20 101.7 126 53.2
vmacro23001 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 4.6e-20 101.7 107 51.4
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 7.9e-20 100.9 114 54.4
Sed0015688 Sechium edule HOM05D003364 ORTHO05D003795 7.9e-20 100.9 115 56.5
Phvul.001G183500 Phaseolus vulgaris HOM05D003364 ORTHO05D003795 1.3e-19 100.1 126 53.2
Rhsim03G0085800 Rhododendron simsii HOM05D003364 ORTHO05D003795 1.8e-19 99.8 80 62.5
unitig_8.g4120 Utricularia gibba HOM05D003364 ORTHO05D003795 2.3e-19 99.4 89 61.8
Peaxi162Scf00146g00018 Petunia axillaris HOM05D003364 ORTHO05D003795 3.0e-19 99.0 108 52.8
Carub.0005s1965 Capsella rubella HOM05D003364 ORTHO05D003795 3.9e-19 98.6 133 48.9
Psat3g038040 Pisum sativum HOM05D003364 ORTHO05D003795 6.7e-19 97.8 126 52.4
Sp5g09200 Schrenkiella parvula HOM05D003364 ORTHO05D003795 1.9e-18 96.3 113 54.9
AT3G53120 Arabidopsis thaliana HOM05D003364 ORTHO05D003795 2.5e-18 95.9 113 54.0
Oeu023984.1 Olea europaea HOM05D003364 ORTHO05D003795 2.5e-18 95.9 78 67.9
Sabra16G0100200 Salix brachista HOM05D003364 ORTHO05D003795 2.5e-18 95.9 115 53.9
Thhalv10017224m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 3.3e-18 95.5 126 49.2
SEGI_00976 Sequoiadendron giganteum HOM05D003364 ORTHO05D003795 3.3e-18 95.5 143 44.8
Ca_08937_v3 Cicer arietinum L. HOM05D003364 ORTHO05D003795 7.4e-18 94.4 126 51.6
Ca_30110_v3 Cicer arietinum L. HOM05D003364 ORTHO05D003795 7.4e-18 94.4 126 51.6
Actinidia32470 Actinidia chinensis HOM05D003364 ORTHO05D003795 9.6e-18 94.0 114 48.2
MBI11_g29030_MAGBIO Magnolia biondii HOM05D003364 ORTHO05D003795 1.3e-17 93.6 133 48.1
RcHm_v2.0_Chr3g0471291 Rosa chinensis HOM05D003364 ORTHO05D003795 1.3e-17 93.6 114 54.4
Glyma.20G077501 Glycine max HOM05D003364 ORTHO05D003795 2.1e-17 92.8 134 47.8
Aqoxy5G02878 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 3.6e-17 92.0 131 48.1
AT2G36680 Arabidopsis thaliana HOM05D003364 ORTHO05D003795 3.6e-17 92.0 127 48.8
FvH4_6g17210 Fragaria vesca HOM05D003364 ORTHO05D003795 4.8e-17 91.7 116 56.0
FAN02G0897 Fragaria x ananassa HOM05D003364 ORTHO05D003795 4.8e-17 91.7 116 56.0
FAN14G4580 Fragaria x ananassa HOM05D003364 ORTHO05D003795 4.8e-17 91.7 116 56.0
Medtr7g102780 Medicago truncatula HOM05D003364 ORTHO05D003795 6.2e-17 91.3 127 51.2
CSS0010979 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 8.1e-17 90.9 73 65.8
Sp4g18950 Schrenkiella parvula HOM05D003364 ORTHO05D003795 8.1e-17 90.9 126 47.6
TPR.G31682 Trifolium pratense HOM05D003364 ORTHO05D003795 1.1e-16 90.5 126 50.8
AL4G32860 Arabidopsis lyrata HOM05D003364 ORTHO05D003795 3.1e-16 89.0 125 45.6
SGA_v2.0_scaffold75G24816 Striga asiatica HOM05D003364 ORTHO05D003795 3.1e-16 89.0 114 51.8
CARHR130970 Cardamine hirsuta HOM05D003364 ORTHO05D003795 4.0e-16 88.6 128 47.7
BcaB02g08535 Brassica carinata HOM05D003364 ORTHO05D003795 5.3e-16 88.2 117 49.6
BcaC02g09182 Brassica carinata HOM05D003364 ORTHO05D003795 6.9e-16 87.8 117 49.6
Zm00001eb006510 Zea mays HOM05D003364 ORTHO05D003795 1.2e-15 87.0 129 43.4
Thhalv10010721m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 2.6e-15 85.9 135 43.7
HPP92_020787 Vanilla planifolia HOM05D003364 ORTHO05D003795 2.6e-15 85.9 133 43.6
A05p09200 Brassica napus HOM05D003364 ORTHO05D003795 5.8e-15 84.7 138 44.2
BolC4t22795H Brassica oleracea HOM05D003364 ORTHO05D003795 5.8e-15 84.7 130 44.6
BcaC02g11785 Brassica carinata HOM05D003364 ORTHO05D003795 7.6e-15 84.3 131 44.3
BolC4t22777H Brassica oleracea HOM05D003364 ORTHO05D003795 7.6e-15 84.3 131 44.3
BcaB02g09341 Brassica carinata HOM05D003364 ORTHO05D003795 9.9e-15 84.0 130 42.3
ATR1158G038 Amborella trichopoda HOM05D003364 ORTHO05D003795 2.2e-14 82.8 122 49.2
Thhalv10023701m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 3.8e-14 82.0 90 55.6
Os03g0186800 Oryza sativa ssp. japonica HOM05D003364 ORTHO05D003795 4.9e-14 81.6 133 42.1
Lsat_1_v5_gn_2_100520 Lactuca sativa HOM05D003364 ORTHO05D003795 6.4e-14 81.3 109 53.2
A04p06260 Brassica napus HOM05D003364 ORTHO05D003795 8.4e-14 80.9 114 49.1
CSS0011074 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 8.4e-14 80.9 76 57.9
Os03g0572300 Oryza sativa ssp. japonica HOM05D003364 ORTHO05D003795 8.4e-14 80.9 114 49.1
BraA04t16331Z Brassica rapa HOM05D003364 ORTHO05D003795 1.1e-13 80.5 115 48.7
CARHR162970 Cardamine hirsuta HOM05D003364 ORTHO05D003795 1.1e-13 80.5 114 50.9
Lsat_1_v5_gn_1_64020 Lactuca sativa HOM05D003364 ORTHO05D003795 1.9e-13 79.7 115 46.1
C04p39770 Brassica napus HOM05D003364 ORTHO05D003795 2.4e-13 79.3 113 48.7
BolC4t25549H Brassica oleracea HOM05D003364 ORTHO05D003795 2.4e-13 79.3 113 48.7
BraA05t19876Z Brassica rapa HOM05D003364 ORTHO05D003795 2.4e-13 79.3 124 42.7
C04p11370 Brassica napus HOM05D000165 ORTHO05D003795 1.2e-12 77.0 127 41.7
Aa31LG5G21880 Aethionema arabicum HOM05D003364 ORTHO05D003795 1.6e-12 76.6 111 48.6
Carub.0004s1850 Capsella rubella HOM05D003364 ORTHO05D003795 1.6e-12 76.6 115 45.2
BcaC03g18177 Brassica carinata HOM05D003364 ORTHO05D003795 2.1e-12 76.3 127 43.3
Hma1.2p1_0970F.1_g242720 Hydrangea macrophylla HOM05D003364 ORTHO05D003795 3.5e-12 75.5 75 58.7
CDE05G1858 Ceratophyllum demersum HOM05D003364 ORTHO05D003795 3.0e-11 72.4 114 39.5
CDE11G0254 Ceratophyllum demersum HOM05D003364 ORTHO05D003795 6.7e-11 71.2 114 40.4
Zm00001eb401560 Zea mays HOM05D003364 ORTHO05D003795 3.3e-10 68.9 117 40.2
DCAR_017656 Daucus carota HOM05D003364 ORTHO05D003795 9.6e-10 67.4 74 55.4
arahy.Tifrunner.gnm1.ann1.HU14K8 Arachis hypogaea HOM05D003364 ORTHO05D003795 1.6e-09 66.6 82 48.8
arahy.Tifrunner.gnm1.ann1.R92IIS Arachis hypogaea HOM05D003364 ORTHO05D003795 1.6e-09 66.6 82 48.8
Psat4g136360 Pisum sativum HOM05D001184 ORTHO05D003397 1.6e-09 66.6 113 45.1
Lj1g0027813 Lotus japonicus HOM05D003364 ORTHO05D003795 6.2e-09 64.7 63 57.1
PSO339G5958 Papaver somniferum HOM05D003364 ORTHO05D003795 1.4e-08 63.5 78 48.7
PSO801G0728 Papaver somniferum HOM05D003364 ORTHO05D003795 1.4e-08 63.5 78 48.7
Glyma.13G147900 Glycine max HOM05D003364 ORTHO05D003795 9.0e-08 60.8 49 61.2
Glyma.10G063400 Glycine max HOM05D003364 ORTHO05D003795 2.0e-07 59.7 62 56.5
Mapoly0070s0080 Marchantia polymorpha HOM05D003364 ORTHO05D003795 4.5e-07 58.5 110 38.2
Phvul.007G226100 Phaseolus vulgaris HOM05D003364 ORTHO05D003795 4.5e-07 58.5 46 67.4
VMungo0720G0068 Vigna mungo HOM05D003364 ORTHO05D003795 5.8e-07 58.2 49 61.2
PSO339G1192 Papaver somniferum HOM05D003364 ORTHO05D003795 1.0e-06 57.4 137 35.8
PSO063G6171 Papaver somniferum HOM05D003364 ORTHO05D003795 4.9e-06 55.1 137 35.0


User provided reference genes

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