Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 8.2e-177 623.6 316 100.0
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 6.7e-163 577.4 316 91.8
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 2.5e-149 532.3 311 85.2
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.3e-147 525.8 313 82.4
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.7e-145 519.6 313 81.8
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 4.1e-144 515.0 312 80.4
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.2e-141 505.0 318 78.9
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 7.2e-141 504.2 318 78.9
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.6e-140 503.1 318 78.9
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 6.1e-140 501.1 311 78.8
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.3e-139 499.2 316 77.2
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 3.0e-139 498.8 316 75.9
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 5.2e-139 498.0 313 77.3
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 6.8e-139 497.7 316 76.9
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 6.8e-139 497.7 313 77.6
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 8.8e-139 497.3 314 78.0
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 2.6e-138 495.7 316 76.9
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.7e-137 491.9 314 77.1
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.1e-136 490.3 313 76.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 7.0e-136 487.6 316 76.6
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 7.7e-135 484.2 316 75.0
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.2e-134 482.6 315 74.6
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.1e-133 480.3 314 75.2
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.5e-133 479.9 314 75.8
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.5e-133 479.9 292 79.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.5e-133 479.2 313 75.1
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 7.2e-133 477.6 313 74.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 9.4e-133 477.2 314 74.5
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 9.4e-133 477.2 316 73.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 6.1e-132 474.6 316 73.4
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 8.0e-132 474.2 313 73.5
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.8e-131 473.0 315 73.0
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 4.0e-131 471.9 313 73.2
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 6.8e-131 471.1 316 73.7
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 8.8e-131 470.7 311 74.0
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 8.8e-131 470.7 316 72.8
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 8.8e-131 470.7 313 73.2
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.5e-130 469.9 316 71.8
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.5e-130 469.9 312 75.0
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.6e-130 469.2 313 73.5
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 4.4e-130 468.4 313 73.5
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 5.7e-130 468.0 315 74.6
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 7.5e-130 467.6 316 73.4
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 9.8e-130 467.2 313 71.9
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 9.8e-130 467.2 299 74.6
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.7e-129 466.5 313 72.5
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.7e-129 466.5 340 70.0
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 2.2e-129 466.1 313 72.5
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.2e-129 466.1 311 74.3
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 3.7e-129 465.3 316 72.8
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 3.7e-129 465.3 315 72.4
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.4e-128 462.6 294 76.5
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 3.1e-128 462.2 313 71.9
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 4.1e-128 461.8 314 72.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.6e-127 459.9 314 71.3
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 5.9e-127 458.0 313 71.2
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 7.7e-127 457.6 313 71.9
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 7.7e-127 457.6 315 72.1
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.7e-126 456.4 304 74.3
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.9e-126 455.7 315 71.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 2.9e-126 455.7 316 69.3
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 6.6e-126 454.5 292 74.3
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 2.5e-125 452.6 315 71.4
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 7.2e-125 451.1 313 71.6
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 9.5e-125 450.7 308 73.1
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.2e-124 450.3 315 69.8
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.1e-124 449.5 308 73.1
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 8.0e-124 447.6 315 71.1
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.2e-123 444.9 305 71.8
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 8.9e-123 444.1 314 69.1
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.4e-122 441.8 315 69.5
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.7e-122 441.4 315 69.2
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.2e-121 439.5 314 68.2
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.2e-121 439.5 316 68.0
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 2.2e-121 439.5 286 74.1
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.7e-121 438.7 311 69.5
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 4.9e-121 438.3 315 69.5
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 4.9e-121 438.3 316 68.4
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 4.9e-121 438.3 343 64.4
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.4e-120 436.8 311 69.5
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 5.4e-120 434.9 314 66.9
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 5.4e-120 434.9 313 67.4
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 3.5e-119 432.2 293 72.0
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.3e-118 430.3 318 68.9
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.3e-118 430.3 313 69.3
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 2.9e-118 429.1 329 65.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.9e-118 429.1 329 65.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.9e-118 429.1 329 65.7
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 5.0e-118 428.3 315 67.6
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 5.0e-118 428.3 315 67.6
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 5.0e-118 428.3 315 67.6
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 5.0e-118 428.3 315 67.6
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 6.6e-118 427.9 299 68.9
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 8.6e-118 427.6 315 67.3
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 8.6e-118 427.6 315 67.3
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.9e-117 426.4 315 67.0
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.9e-117 426.4 320 65.9
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 5.6e-117 424.9 317 65.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.6e-116 423.3 315 67.0
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 2.1e-116 422.9 326 65.0
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.8e-116 422.5 329 64.4
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 4.7e-116 421.8 314 65.3
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 8.0e-116 421.0 314 65.3
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.0e-115 420.6 299 68.6
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.0e-115 420.6 339 63.7
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 1.8e-115 419.9 299 68.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 1.8e-115 419.9 299 68.2
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.3e-115 419.5 299 68.2
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 3.1e-115 419.1 313 66.1
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.9e-113 411.8 316 63.6
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.7e-111 406.0 257 76.3
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.7e-111 406.0 291 66.3
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.1e-109 400.6 300 65.7
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.6e-108 396.7 315 63.2
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.2e-108 394.8 328 62.2
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.4e-107 393.7 271 68.3
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.9e-107 391.0 253 73.9
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.4e-106 389.0 329 62.9
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 7.3e-101 371.3 313 62.6
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.1e-100 369.8 315 61.9
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 9.2e-96 354.4 296 57.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.8e-92 342.8 225 74.7
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 6.8e-91 338.2 319 53.3
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.5e-90 337.0 299 56.5
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 5.4e-88 328.6 233 68.2
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.3e-84 317.4 294 52.7
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 8.1e-84 314.7 307 51.8
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.2e-82 310.8 222 68.0
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 7.1e-80 301.6 276 56.9
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.2e-74 284.3 294 51.4
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 4.2e-72 275.8 294 48.3
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 1.5e-69 267.3 312 51.0
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.0e-65 254.6 296 47.3
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 5.0e-49 199.1 286 39.9
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 3.1e-43 179.9 185 54.1
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.2e-34 151.4 104 71.2
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 1.1e-32 144.8 90 81.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.5e-32 143.7 94 74.5
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 3.2e-32 143.3 93 75.3
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.0e-25 121.7 79 73.4
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 4.1e-19 99.8 90 58.9
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 4.1e-19 99.8 90 58.9
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 7.7e-18 95.5 114 48.2
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.3e-14 84.0 90 52.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 2.4e-11 73.9 98 49.0


User provided reference genes

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