Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 7.4e-305 1049.7 510 100.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.0e-205 720.3 515 71.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.0e-205 718.8 405 88.9
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.9e-192 675.6 561 63.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.1e-186 655.6 516 66.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.8e-178 629.8 406 77.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.4e-172 609.0 634 52.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.3e-163 580.5 512 59.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.1e-162 575.5 402 70.4
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 8.9e-157 557.8 518 59.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.3e-155 553.9 404 66.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.9e-155 552.0 518 57.7
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-154 550.8 404 66.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.2e-154 547.7 468 61.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.2e-154 547.7 468 61.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.3e-152 543.9 506 57.9
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.3e-152 543.1 516 57.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.9e-152 542.3 504 57.3
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.9e-152 542.3 504 57.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.0e-152 542.0 502 58.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.1e-150 536.6 496 58.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.0e-148 530.0 473 59.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.4e-146 523.1 468 58.8
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.6e-145 520.4 417 63.3
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.0e-145 520.0 501 55.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-145 520.0 501 56.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 8.6e-144 514.6 516 55.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-143 513.5 407 64.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.9e-143 513.5 499 57.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 9.5e-143 511.1 470 57.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.8e-142 509.6 498 55.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.8e-141 506.9 518 53.5
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.3e-141 506.5 503 53.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.1e-141 506.1 518 54.1
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.1e-141 506.1 508 54.5
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.2e-141 505.4 518 53.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 5.2e-141 505.4 539 51.8
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 5.2e-141 505.4 516 54.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 6.8e-141 505.0 471 57.5
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.8e-141 505.0 470 57.7
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.8e-141 505.0 471 58.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.2e-140 504.2 470 57.4
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.5e-140 503.8 484 56.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.6e-140 503.1 515 53.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.4e-140 502.3 486 56.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.5e-140 501.5 514 53.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.2e-139 500.0 507 54.8
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.2e-139 500.0 467 57.8
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.7e-139 499.2 493 56.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 6.4e-139 498.4 396 63.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-138 497.7 472 56.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.4e-138 497.3 465 56.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.4e-138 497.3 464 56.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.2e-138 496.1 518 53.7
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.4e-138 495.4 396 62.9
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 7.1e-138 495.0 396 62.1
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.6e-137 493.8 520 53.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.7e-137 493.0 455 57.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.5e-137 492.7 468 56.6
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.0e-136 491.1 466 55.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-136 490.7 472 54.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.3e-136 490.0 469 55.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.9e-136 489.2 501 52.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.1e-136 488.8 407 61.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.1e-136 488.8 517 51.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.1e-136 488.8 470 57.0
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 8.6e-136 488.0 467 57.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.6e-135 485.3 490 54.9
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.6e-135 485.3 471 55.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.6e-135 485.3 465 55.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.3e-135 485.0 466 54.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.3e-135 485.0 466 54.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-134 484.2 466 56.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.7e-134 482.3 489 53.0
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 8.1e-134 481.5 468 55.3
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.1e-134 481.5 471 55.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-133 480.7 467 54.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.8e-133 480.3 471 57.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.8e-133 480.3 405 59.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.1e-133 479.6 470 55.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.0e-133 479.2 402 60.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.2e-133 478.8 434 57.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.8e-133 478.4 483 53.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 8.9e-133 478.0 433 57.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.4e-130 469.9 483 52.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 4.1e-130 469.2 430 56.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.4e-130 468.8 496 51.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 7.1e-130 468.4 396 59.1
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.2e-129 467.6 504 51.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.0e-129 465.3 416 55.5
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.0e-128 464.5 433 54.5
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.3e-128 464.2 416 56.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.7e-128 461.5 477 53.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-127 461.1 515 49.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.1e-127 461.1 447 54.4
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.5e-127 460.7 480 51.7
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.3e-127 459.5 388 59.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.3e-127 459.1 483 51.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 7.3e-127 458.4 462 52.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 7.3e-127 458.4 462 52.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 7.3e-127 458.4 462 52.6
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.1e-126 456.8 368 59.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.1e-126 456.8 407 56.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.6e-126 456.1 486 51.9
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.2e-126 455.3 441 54.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 8.1e-126 454.9 466 52.8
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-125 454.1 407 56.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.8e-125 453.8 418 57.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 9.0e-125 451.4 425 54.8
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-124 451.1 437 53.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.2e-124 451.1 425 54.8
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-124 450.3 420 55.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-124 450.3 407 56.3
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-124 449.5 438 53.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.4e-124 449.5 438 53.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.4e-124 449.5 407 56.5
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 9.9e-124 448.0 431 55.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.7e-123 447.2 416 54.3
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-123 447.2 432 56.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-123 446.8 431 56.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.8e-123 446.0 466 52.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.9e-123 445.7 440 52.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.9e-123 445.7 538 47.8
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 8.4e-123 444.9 424 56.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-122 444.5 379 60.4
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.4e-122 444.1 319 69.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-122 444.1 431 55.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.9e-122 443.7 405 54.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-121 441.0 416 54.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.2e-121 441.0 417 54.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.0e-120 438.0 438 53.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-120 438.0 437 53.3
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-120 437.6 441 51.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.0e-117 426.0 384 56.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.5e-116 422.5 496 49.4
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.2e-115 420.2 472 50.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.5e-113 412.9 353 60.1
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.5e-113 412.9 388 54.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 6.0e-113 412.1 704 37.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 8.7e-112 408.3 478 48.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.0e-108 397.1 377 56.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.8e-107 392.9 390 54.6
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 4.9e-107 392.5 342 59.4
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.1e-106 391.3 387 51.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 4.3e-103 379.4 405 50.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.7e-99 367.5 377 51.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.4e-98 364.4 318 56.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-80 305.1 221 66.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-71 272.3 221 58.8
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.6e-68 264.6 203 62.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.4e-61 240.7 258 52.7
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-59 233.4 312 42.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.2e-58 229.2 252 53.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 6.8e-56 222.6 236 51.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.0e-55 221.1 276 45.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-52 211.5 416 37.5
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 8.6e-51 205.7 249 47.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 5.6e-42 176.4 437 30.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.1e-41 174.5 274 42.3
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.4e-31 140.6 118 62.7
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.8e-31 139.0 189 41.8
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.7e-27 128.3 126 54.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.4e-24 118.6 126 46.0
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-23 115.2 132 50.0
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.4e-23 114.0 102 54.9
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.9e-21 108.2 130 46.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.3e-19 102.1 227 30.0
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.8e-14 84.0 111 43.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.3e-10 70.5 45 66.7
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-09 68.9 157 37.6
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.0e-08 63.9 45 60.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.4e-07 60.8 324 25.9


User provided reference genes

Program Settings