Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 3532.3 1849 100.0
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2583.9 1912 73.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2577.7 1926 72.1
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2318.5 2012 65.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2307.7 1967 65.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2296.2 1946 65.8
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2267.3 2001 63.9
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2267.3 1971 65.7
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2262.6 1971 65.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2234.1 1910 65.4
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2219.1 1974 63.7
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2209.9 1971 64.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2208.7 1972 63.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2207.9 2003 63.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2205.3 2008 63.0
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2188.7 2120 60.9
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2186.4 1997 63.0
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2184.1 2010 62.6
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2182.1 1912 64.7
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2179.4 2005 62.4
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2179.4 1969 63.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2169.4 2002 61.1
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2167.9 2001 61.7
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2159.0 2015 60.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2158.3 1993 62.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2154.0 1993 61.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 2003 61.7
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2149.0 2004 61.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1971 62.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2147.5 1984 62.2
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2140.5 1970 63.6
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2139.4 1991 62.3
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2130.9 1912 64.1
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2130.1 1993 61.6
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2127.4 1947 63.8
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2127.1 1985 61.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2122.8 2004 61.9
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2120.5 2039 60.6
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2120.1 1993 61.1
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2109.7 1957 63.1
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2106.6 1989 61.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2106.6 1991 61.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2106.3 1959 61.4
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2098.2 1985 61.2
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2097.0 2028 60.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2096.6 1920 63.1
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2090.8 1975 61.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2090.1 1989 61.2
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2078.5 1980 60.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2078.1 1975 60.6
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2078.1 1988 60.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2077.8 1984 60.3
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2048.1 2100 58.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2036.5 1984 59.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2036.5 2233 54.4
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2033.8 1943 60.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2018.0 1810 62.5
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2009.2 1975 58.6
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1999.2 1831 62.8
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1997.2 1981 60.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1996.9 1950 58.8
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1979.1 1980 58.0
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1974.9 1987 58.6
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1963.3 1944 58.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1962.6 1934 59.7
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1956.8 1828 61.5
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1951.4 1962 58.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1949.9 1960 58.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1949.9 1983 56.4
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1949.5 1952 58.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1943.7 1989 58.2
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1936.4 1843 60.8
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1934.5 1941 58.7
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1931.8 1941 58.5
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1931.4 1988 58.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1931.0 1944 59.1
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1923.3 1938 58.8
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1919.8 1989 57.6
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1916.4 1943 58.1
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1910.6 1987 57.4
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1905.6 1993 57.3
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1893.2 1993 57.2
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1884.8 1452 69.4
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1875.5 1925 57.9
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1875.5 1957 57.9
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1848.6 1883 58.7
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1839.7 1943 56.8
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1702.2 1916 52.1
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1682.2 1596 61.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1661.0 2094 49.6
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1630.9 1620 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1629.8 2078 49.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1519.2 1932 47.8
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1493.8 1210 70.6
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1489.9 1930 47.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1477.6 1925 49.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1365.1 1341 61.3
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1360.1 1347 60.5
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1356.7 1087 66.2
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1290.4 1189 62.1
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1245.0 1209 62.4
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1182.5 1538 50.1
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1094.3 938 62.6
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1079.7 1043 58.2
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 3.7e-285 986.1 674 76.9
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.0e-274 951.4 1467 40.6
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.5e-273 945.7 1111 54.6
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 8.2e-269 931.8 1099 55.4
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 2.3e-263 913.7 674 70.2
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 5.8e-206 723.0 1049 45.1
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.6e-203 714.9 843 57.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.9e-201 708.0 930 51.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.1e-192 677.9 1386 34.1
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.5e-182 645.2 550 64.9
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 4.1e-159 567.4 373 78.6
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.3e-152 543.5 366 76.0
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.2e-140 504.2 367 71.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.1e-139 501.9 1349 30.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.2e-132 478.0 370 66.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.9e-101 374.8 486 48.1
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 3.4e-97 361.7 297 63.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.2e-88 332.4 239 72.8
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.9e-87 329.3 297 60.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.0e-86 324.3 262 67.9
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.1e-82 313.5 198 79.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.3e-77 296.6 317 52.7
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 4.8e-75 288.1 517 48.2
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 4.0e-74 285.0 1474 22.9
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 2.2e-64 252.7 264 52.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 8.4e-64 250.8 229 62.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 2.4e-63 249.2 1850 23.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.4e-58 232.6 520 40.8
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.1e-51 209.5 237 51.5
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.4e-50 206.8 170 62.9
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.8e-50 206.5 243 50.6
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.7e-48 199.9 184 57.6
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.6e-46 193.4 273 47.3
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.1e-46 191.4 176 58.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.7e-40 173.3 348 37.6
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.2e-38 167.2 222 47.7
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 8.8e-37 161.0 163 52.1
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.2e-35 156.4 106 72.6
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.1e-34 152.5 338 40.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.1e-34 152.5 89 79.8
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 7.4e-28 131.3 112 66.1
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 7.0e-26 124.8 75 85.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 9.1e-26 124.4 87 66.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.5e-25 122.5 105 65.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.5e-25 122.5 125 61.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.9e-23 116.7 69 85.5
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.1e-22 113.2 100 63.0
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 8.0e-22 111.3 79 72.2
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 4.0e-21 109.0 68 79.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.3e-20 105.9 149 45.0
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.4e-18 99.8 79 59.5
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-17 97.4 127 48.0
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 78 62.8
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 78 62.8
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 2.9e-16 92.8 59 76.3
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 8.5e-16 91.3 78 61.5
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 8.0e-14 84.7 100 47.0
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.5e-12 80.5 40 90.0
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 7.5e-12 78.2 36 94.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.7e-11 75.9 48 75.0
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.8e-10 73.6 94 46.8
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.2e-09 70.9 53 73.6
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.2e-09 70.9 55 63.6
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.5e-09 68.9 77 51.9
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.2e-08 66.6 73 49.3
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 2.2e-08 66.6 68 50.0
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 8.5e-08 64.7 74 48.6
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.6e-06 59.3 86 41.9


User provided reference genes

Program Settings