Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.9e-106 389.4 226 100.0
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.8e-48 196.8 139 91.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.8e-38 162.2 135 79.3
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.5e-36 157.1 130 78.5
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-36 157.1 135 77.0
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-36 157.1 135 77.0
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-36 157.1 135 77.0
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.4e-34 150.6 133 75.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 2.5e-34 149.8 134 76.1
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 7.2e-34 148.3 130 72.3
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.2e-34 148.3 130 74.6
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 9.4e-34 147.9 132 73.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.6e-33 147.1 130 71.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.1e-33 146.7 129 72.9
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 2.1e-33 146.7 129 73.6
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 6.1e-33 145.2 130 61.5
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.8e-32 143.7 135 70.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.8e-32 143.7 130 74.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-32 143.3 135 71.1
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-32 143.3 135 71.1
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 6.7e-32 141.7 130 49.2
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 6.7e-32 141.7 130 71.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 8.8e-32 141.4 134 54.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.1e-31 141.0 129 68.2
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.5e-31 140.6 132 71.2
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 2.6e-31 139.8 128 74.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.3e-31 139.4 129 69.8
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.3e-31 139.4 129 72.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 4.4e-31 139.0 133 67.7
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.7e-31 138.7 130 72.3
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 5.7e-31 138.7 130 72.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 5.7e-31 138.7 129 72.1
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 5.7e-31 138.7 134 67.9
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 7.4e-31 138.3 139 66.9
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 7.4e-31 138.3 132 72.0
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.3e-30 137.5 135 71.1
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.3e-30 137.5 129 71.3
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.2e-30 136.7 130 70.0
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.8e-30 136.3 130 67.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 6.3e-30 135.2 135 69.6
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.1e-29 134.4 130 70.0
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.4e-29 134.0 130 70.0
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.4e-29 134.0 129 65.1
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.4e-29 134.0 130 69.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 1.4e-29 134.0 133 67.7
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 2.4e-29 133.3 133 67.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.4e-29 133.3 129 62.8
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 3.1e-29 132.9 127 70.1
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 3.1e-29 132.9 132 57.6
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 4.1e-29 132.5 129 71.3
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 4.1e-29 132.5 128 59.4
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 9.1e-29 131.3 131 66.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 9.1e-29 131.3 133 66.2
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.6e-28 130.6 138 61.6
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.6e-28 130.6 133 64.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 2.0e-28 130.2 130 66.9
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 2.0e-28 130.2 133 68.4
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.6e-28 129.8 131 67.2
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.5e-28 129.4 129 66.7
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.5e-28 129.4 125 68.8
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 7.7e-28 128.3 127 69.3
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 7.7e-28 128.3 133 66.9
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.7e-27 127.1 130 66.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.9e-27 126.3 122 72.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.8e-27 125.9 135 64.4
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 5.0e-27 125.6 80 71.2
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 8.5e-27 124.8 130 65.4
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.9e-26 123.6 128 68.0
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 1.9e-26 123.6 121 47.9
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.5e-26 123.2 129 66.7
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 3.2e-26 122.9 127 66.1
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.5e-26 122.1 127 66.1
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 7.2e-26 121.7 127 66.9
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.2e-25 120.9 126 64.3
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.7e-25 119.8 127 63.8
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 3.6e-25 119.4 121 67.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.7e-25 119.0 127 64.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.7e-25 119.0 132 54.5
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 8.0e-25 118.2 84 54.8
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.0e-24 117.9 127 64.6
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.4e-24 117.5 78 65.4
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.3e-24 116.7 135 61.5
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.3e-24 116.7 80 61.2
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.0e-24 116.3 118 66.1
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 5.2e-24 115.5 127 63.0
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 5.2e-24 115.5 127 63.0
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 3.3e-23 112.8 127 61.4
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 4.4e-23 112.5 131 52.7
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 5.7e-23 112.1 116 67.2
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.8e-21 107.1 118 65.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 7.0e-21 105.1 131 59.5
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.2e-20 104.4 135 37.0
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.7e-20 103.2 128 57.0
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.7e-20 103.2 128 57.0
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 3.5e-20 102.8 128 56.2
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.5e-20 102.4 126 57.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.5e-20 102.4 128 56.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 5.9e-20 102.1 109 45.9
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 5.9e-20 102.1 84 50.0
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.3e-19 100.9 128 57.0
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.7e-19 100.5 134 37.3
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.2e-19 100.1 128 57.8
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 8.5e-19 98.2 128 57.0
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 8.5e-19 98.2 128 57.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 5.5e-18 95.5 133 54.9
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 7.2e-18 95.1 114 55.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 9.4e-18 94.7 117 57.3
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.7e-17 93.2 101 72.3
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.6e-17 92.8 114 54.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.8e-16 90.5 138 41.3
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 1.8e-16 90.5 96 60.4
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.8e-16 90.5 106 67.9
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 6.8e-16 88.6 116 49.1
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.5e-15 87.4 128 52.3
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.2e-14 83.6 127 52.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.4e-13 79.0 118 33.9
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.4e-13 79.0 118 33.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.4e-13 79.0 118 33.9
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.0e-12 77.0 119 32.8
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.5e-12 76.3 118 32.2
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 3.5e-12 76.3 118 32.2
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 3.5e-12 76.3 118 32.2
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.3e-11 74.3 126 49.2
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.5e-10 70.9 57 52.6
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 9.4e-10 68.2 58 50.0
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.1e-09 67.0 139 41.0
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 8.0e-09 65.1 93 36.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-08 64.3 94 48.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.0e-08 62.8 105 27.6
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 8.8e-08 61.6 159 30.2


User provided reference genes

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