Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 0.0e+00 1140.9 649 100.0
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.5e-164 583.9 663 55.1
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 3.2e-87 327.0 673 37.0
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 7.5e-76 289.3 742 33.6
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.2e-75 287.7 644 39.9
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 6.0e-49 199.9 392 35.2
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 3.1e-37 161.0 805 27.5
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 1.0e-32 146.0 345 31.0
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.7e-32 145.2 322 32.3
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.6e-31 140.2 316 31.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.3e-30 139.0 822 25.5
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.1e-30 138.3 443 29.3
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.4e-29 135.6 355 29.3
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.0e-29 134.0 692 24.3
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 9.0e-29 132.9 363 30.9
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.0e-28 131.7 780 26.7
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.5e-28 130.6 368 27.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 5.8e-28 130.2 344 29.9
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 7.6e-28 129.8 347 30.3
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 4.2e-26 124.0 359 29.8
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 7.1e-26 123.2 388 27.1
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 9.3e-26 122.9 351 28.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 4.6e-25 120.6 343 28.6
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 4.6e-25 120.6 317 29.7
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.3e-24 119.0 344 26.7
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.5e-23 115.5 377 27.6
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.9e-23 115.2 348 29.6
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.5e-23 114.8 344 25.9
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.5e-23 114.8 507 26.4
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.3e-23 114.4 344 26.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.3e-23 114.4 341 29.9
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.3e-23 114.0 350 25.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.3e-22 112.5 350 26.9
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 1.3e-22 112.5 450 27.8
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.1e-22 111.7 364 26.4
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.1e-22 111.7 615 24.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 2.8e-22 111.3 377 29.2
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.7e-22 110.9 381 27.0
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 6.2e-22 110.2 346 26.6
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.4e-21 109.0 342 26.6
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.8e-21 108.6 112 53.6
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 2.4e-21 108.2 335 28.7
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 3.1e-21 107.8 294 31.3
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 4.0e-21 107.5 385 26.8
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 9.0e-21 106.3 343 25.9
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.5e-20 105.5 343 25.9
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 2.0e-20 105.1 118 50.8
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.6e-20 104.8 392 26.8
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 7.6e-20 103.2 536 24.6
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 9.9e-20 102.8 333 27.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 4.9e-19 100.5 342 26.9
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 5.5e-18 97.1 372 25.5
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 5.5e-18 97.1 288 27.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 9.3e-18 96.3 281 30.2
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 6.0e-17 93.6 136 41.2
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 7.9e-17 93.2 670 24.9
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.8e-16 92.0 386 25.4
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.8e-16 92.0 377 24.7
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.3e-16 91.7 274 28.1
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 3.0e-16 91.3 126 40.5
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 3.0e-16 91.3 288 28.1
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 6.7e-16 90.1 138 43.5
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 8.7e-16 89.7 132 39.4
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 8.7e-16 89.7 274 29.6
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.1e-15 89.4 179 34.1
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.9e-15 88.6 318 26.4
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.3e-15 87.4 558 23.8
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 9.6e-15 86.3 374 25.4
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.6e-15 86.3 536 25.0
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 1.6e-14 85.5 401 26.4
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.7e-14 84.3 136 33.8
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 3.7e-14 84.3 427 24.6
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 6.2e-14 83.6 137 36.5
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 8.2e-14 83.2 231 27.7
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.1e-13 82.8 93 43.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.4e-13 81.6 662 23.3
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.4e-13 81.6 157 36.9
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 2.4e-13 81.6 617 22.2
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 2.4e-13 81.6 92 39.1
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.3e-13 80.5 306 27.5
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.3e-13 80.5 94 41.5
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 6.9e-13 80.1 101 40.6
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 6.9e-13 80.1 89 39.3
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 9.0e-13 79.7 399 26.1
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 2.0e-12 78.6 73 45.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.6e-12 78.2 79 44.3
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.5e-12 77.4 373 22.3
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 4.5e-12 77.4 280 25.4
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 5.8e-12 77.0 370 23.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 5.8e-12 77.0 98 37.8
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 5.8e-12 77.0 91 39.6
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 7.6e-12 76.6 100 37.0
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.7e-11 75.5 106 38.7
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.7e-11 75.5 106 38.7
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.9e-11 74.7 334 24.9
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 4.9e-11 73.9 361 24.7
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 4.9e-11 73.9 306 26.5
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.4e-11 73.2 165 30.9
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 8.4e-11 73.2 437 24.5
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 8.4e-11 73.2 394 26.9
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.4e-10 72.4 93 39.8
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.9e-10 72.0 143 35.0
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.2e-10 70.9 258 25.2
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 5.5e-10 70.5 112 33.9
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 7.1e-10 70.1 102 34.3
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 9.3e-10 69.7 235 28.5
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 9.3e-10 69.7 258 27.1
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 9.3e-10 69.7 221 27.1
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.2e-09 69.3 99 37.4
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.6e-09 68.9 97 36.1
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.1e-09 68.6 221 25.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.7e-09 68.2 110 34.5
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 3.5e-09 67.8 349 24.1
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 3.5e-09 67.8 149 30.9
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 3.5e-09 67.8 98 37.8
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 4.6e-09 67.4 71 46.5
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 4.6e-09 67.4 359 23.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 6.0e-09 67.0 221 27.6
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 6.0e-09 67.0 42 61.9
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 7.9e-09 66.6 95 40.0
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 7.9e-09 66.6 333 24.3
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.3e-08 65.9 306 25.5
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.3e-08 65.9 258 26.4
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 1.8e-08 65.5 59 50.8
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.8e-08 65.5 612 20.9
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.3e-08 65.1 258 26.0
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 2.3e-08 65.1 127 32.3
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 3.0e-08 64.7 86 41.9
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.0e-08 64.7 86 41.9
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 3.0e-08 64.7 158 31.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 3.0e-08 64.7 163 35.0
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.0e-08 64.7 118 37.3
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 3.9e-08 64.3 127 32.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 3.9e-08 64.3 106 34.0
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 5.1e-08 63.9 71 45.1
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 5.1e-08 63.9 98 37.8
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.1e-08 63.9 101 36.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.7e-08 63.5 127 30.7
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 1.1e-07 62.8 123 33.3
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.1e-07 62.8 91 37.4
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 1.1e-07 62.8 55 47.3
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.5e-07 62.4 318 23.9
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 1.5e-07 62.4 156 32.1
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.5e-07 62.4 128 26.6
Os08g0206700 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.5e-07 61.6 57 47.4
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 3.3e-07 61.2 360 23.9
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 4.3e-07 60.8 240 28.3
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 5.7e-07 60.5 71 43.7
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 5.7e-07 60.5 71 43.7
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 5.7e-07 60.5 71 43.7
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 7.4e-07 60.1 71 42.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 9.7e-07 59.7 183 30.1
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 9.7e-07 59.7 147 33.3
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 1.3e-06 59.3 69 39.1
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 1.3e-06 59.3 69 39.1
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.6e-06 58.9 346 27.7
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 2.1e-06 58.5 59 44.1
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 2.8e-06 58.2 115 29.6
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 3.7e-06 57.8 129 31.0
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.8e-06 57.4 108 31.5


User provided reference genes

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