Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14910 Striga asiatica HOM05D000681 ORTHO05D010465 5.5e-86 320.9 155 100.0
SGA_v2.0_scaffold105G30342 Striga asiatica HOM05D010327 ORTHO05D010465 1.6e-29 133.3 66 93.9
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 1.7e-18 96.7 72 69.4
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 2.9e-18 95.9 72 68.1
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 6.5e-18 94.7 72 68.1
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 8.4e-18 94.4 72 66.7
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 8.4e-18 94.4 72 68.1
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.1e-17 94.0 115 47.8
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 1.4e-17 93.6 72 63.9
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 1.4e-17 93.6 72 66.7
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.4e-17 93.6 72 66.7
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 1.4e-17 93.6 106 48.1
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 1.4e-17 93.6 72 63.9
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 1.9e-17 93.2 72 66.7
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 1.9e-17 93.2 72 66.7
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 2.5e-17 92.8 72 65.3
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 2.5e-17 92.8 72 65.3
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.5e-17 92.8 72 66.7
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.5e-17 92.8 72 66.7
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 2.5e-17 92.8 72 62.5
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 68.1
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 68.1
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 3.2e-17 92.4 106 48.1
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 66.7
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 66.7
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 66.7
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 66.7
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 3.2e-17 92.4 72 66.7
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 4.2e-17 92.0 72 65.3
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 4.2e-17 92.0 106 48.1
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 4.2e-17 92.0 72 66.7
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 65.3
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 66.7
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 5.5e-17 91.7 106 48.1
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 63.9
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 62.5
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 65.3
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 5.5e-17 91.7 72 63.9
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 7.1e-17 91.3 72 65.3
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 7.1e-17 91.3 72 65.3
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 9.3e-17 90.9 72 66.7
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 9.3e-17 90.9 72 65.3
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 9.3e-17 90.9 106 46.2
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 9.3e-17 90.9 72 63.9
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 1.2e-16 90.5 72 63.9
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 1.2e-16 90.5 72 63.9
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 65.3
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 63.9
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 65.3
COL.COLO4_11004 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 65.3
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 63.9
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 63.9
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 1.6e-16 90.1 72 63.9
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 63.9
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 65.3
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 62.5
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 62.5
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 63.9
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 2.1e-16 89.7 72 62.5
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 2.7e-16 89.4 106 48.1
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 2.7e-16 89.4 72 62.5
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.7e-16 89.4 72 65.3
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 2.7e-16 89.4 72 62.5
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.7e-16 89.4 72 62.5
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 2.7e-16 89.4 72 63.9
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 62.5
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 66.7
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 3.5e-16 89.0 72 63.9
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 63.9
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 62.5
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 4.6e-16 88.6 72 61.1
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 62.5
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 62.5
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 62.5
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 63.9
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 63.9
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 63.9
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 61.1
SEGI_28136 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 6.1e-16 88.2 72 62.5
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 63.9
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 61.1
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 63.9
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 63.9
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 62.5
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 7.9e-16 87.8 72 62.5
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 61.1
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 61.1
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 63.9
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 61.1
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.0e-15 87.4 106 46.2
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 1.0e-15 87.4 106 45.3
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 61.1
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 1.0e-15 87.4 72 62.5
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 1.3e-15 87.0 72 59.7
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 1.3e-15 87.0 73 63.0
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 1.3e-15 87.0 72 62.5
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.3e-15 87.0 72 62.5
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.8e-15 86.7 72 59.7
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 1.8e-15 86.7 72 62.5
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
FAN28G1262 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 2.3e-15 86.3 72 62.5
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 2.3e-15 86.3 106 45.3
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 3.0e-15 85.9 70 64.3
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 6.7e-15 84.7 74 59.5
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 6.7e-15 84.7 72 59.7
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 8.7e-15 84.3 72 61.1
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 8.7e-15 84.3 72 56.9
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.5e-14 83.6 68 63.2
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 1.9e-14 83.2 72 59.7
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 3.3e-14 82.4 72 56.9
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 3.3e-14 82.4 69 63.8
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 5.7e-14 81.6 69 62.3
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 2.8e-13 79.3 72 54.2
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 3.7e-13 79.0 69 60.9
AUR62005304 Chenopodium quinoa HOM05D000681 ORTHO05D044033 3.7e-13 79.0 103 43.7
AUR62007005 Chenopodium quinoa HOM05D000681 ORTHO05D044033 3.7e-13 79.0 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 4.8e-13 78.6 72 55.6
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 6.3e-13 78.2 72 55.6
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 4.1e-12 75.5 77 49.4
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 4.1e-12 75.5 69 56.5
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 1.4e-09 67.0 72 50.0
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 1.2e-08 63.9 69 46.4
Pp3c21_9610 Physcomitrium patens HOM05D000681 ORTHO05D005458 2.3e-07 59.7 75 48.0


User provided reference genes

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