Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.0e-233 812.0 392 100.0
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.7e-206 721.1 405 88.9
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.7e-182 641.3 404 78.0
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.2e-180 636.7 399 78.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.2e-170 602.1 403 73.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 4.1e-170 601.7 445 68.5
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-164 581.6 400 70.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-158 562.8 404 67.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.2e-158 561.2 406 67.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 4.9e-155 551.6 436 63.1
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.4e-154 550.1 433 63.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.4e-154 550.1 433 63.0
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.2e-153 547.0 433 62.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.7e-153 545.8 406 65.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.1e-152 541.6 408 66.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.1e-152 541.6 408 66.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.5e-151 539.3 408 64.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.3e-151 538.9 392 66.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.3e-149 532.7 411 63.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.5e-148 530.0 406 63.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 5.8e-148 528.1 400 65.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.2e-147 526.2 526 53.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.9e-147 525.8 398 66.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 7.1e-146 521.2 396 63.9
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-145 520.4 396 63.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.6e-145 520.0 397 64.5
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.0e-145 518.1 397 63.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.0e-144 517.3 404 62.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.0e-144 517.3 386 64.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 5.1e-144 515.0 408 63.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.6e-144 514.6 416 62.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 8.6e-144 514.2 396 64.1
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 8.6e-144 514.2 402 63.7
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 8.6e-144 514.2 405 63.0
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-143 513.8 408 62.5
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-143 513.8 408 62.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.9e-143 513.1 404 62.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.3e-143 512.3 408 62.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 5.6e-143 511.5 406 62.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.2e-142 510.4 408 61.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.6e-142 510.0 406 64.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.6e-142 510.0 404 63.1
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.6e-142 510.0 397 64.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.2e-142 508.1 408 61.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.1e-141 505.8 405 61.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.1e-141 505.8 408 61.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 4.0e-141 505.4 407 61.2
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.2e-141 505.0 404 62.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 5.2e-141 505.0 407 61.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.5e-140 503.4 392 62.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 7.6e-140 501.1 406 61.6
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 9.9e-140 500.7 407 61.7
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 9.9e-140 500.7 407 60.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.4e-139 498.0 409 60.1
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.1e-138 497.3 395 61.3
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-138 496.9 408 60.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.4e-138 496.1 409 60.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.2e-138 495.4 406 61.1
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 7.1e-138 494.6 410 60.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.3e-138 494.2 411 61.1
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 9.3e-138 494.2 405 61.0
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.2e-137 493.8 475 53.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.7e-137 492.7 401 61.1
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.7e-137 492.7 408 60.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 6.0e-137 491.5 406 61.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 6.0e-137 491.5 405 61.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.8e-137 491.1 407 59.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.6e-136 488.0 411 58.4
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.1e-135 487.3 410 59.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.5e-135 486.9 406 59.9
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.3e-135 485.7 421 58.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.3e-135 485.7 405 59.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.3e-135 485.7 405 60.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 5.6e-135 485.0 402 59.2
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 5.6e-135 485.0 402 59.2
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.3e-134 483.8 404 59.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.6e-134 482.3 435 56.6
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.6e-134 482.3 357 64.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.8e-134 481.9 403 60.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.8e-134 481.9 403 59.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-133 480.7 398 61.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.1e-133 479.2 405 58.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.0e-133 478.8 396 58.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.0e-133 478.8 395 59.0
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 5.3e-133 478.4 404 60.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.9e-133 478.0 395 58.7
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-132 477.2 422 56.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.6e-132 476.1 414 59.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.6e-132 476.1 398 58.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.5e-132 475.3 396 59.1
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.2e-131 473.0 396 58.6
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-131 473.0 395 58.7
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.8e-131 472.2 397 58.2
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.8e-131 472.2 385 59.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.9e-131 471.9 395 58.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.4e-131 471.5 402 58.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.1e-130 470.7 414 58.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-130 470.3 395 58.0
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.4e-130 469.5 395 57.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.4e-130 469.5 395 57.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.4e-130 468.4 395 58.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 7.1e-130 468.0 395 57.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 7.1e-130 468.0 396 57.6
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.1e-129 466.5 402 58.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.0e-129 464.9 388 58.5
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.0e-129 464.9 388 58.5
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.0e-129 464.9 388 58.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 6.0e-129 464.9 396 59.3
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.9e-128 462.2 397 56.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.9e-128 462.2 395 56.7
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.3e-127 459.1 360 60.3
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.3e-127 458.8 390 57.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-127 458.0 390 57.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 7.4e-127 458.0 403 58.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 9.6e-127 457.6 390 57.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.6e-127 457.6 384 57.0
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.3e-126 457.2 398 56.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.1e-126 456.4 403 56.8
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.4e-125 453.8 395 55.4
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-125 453.8 406 56.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.8e-125 453.4 408 56.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.4e-125 453.0 395 57.0
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 4.0e-125 452.2 399 56.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.0e-125 452.2 384 57.8
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.0e-125 452.2 408 56.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.0e-125 452.2 376 58.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-125 451.4 412 56.3
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-124 450.7 360 60.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-124 449.9 407 56.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-123 446.8 400 56.0
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-123 446.4 395 56.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.9e-123 445.3 479 50.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-121 439.9 319 67.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.5e-121 439.1 376 56.6
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 6.0e-121 438.3 409 54.3
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 6.7e-120 434.9 411 55.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 5.6e-119 431.8 412 54.1
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.5e-116 422.2 644 40.1
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 8.4e-115 417.9 378 52.1
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.5e-113 412.5 399 52.9
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.1e-111 407.5 405 51.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.1e-109 399.4 291 65.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 7.6e-108 394.8 291 63.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.3e-107 394.0 289 65.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.1e-101 372.5 363 51.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.5e-98 363.2 244 68.9
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.1e-97 358.6 287 58.9
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.5e-76 289.3 220 63.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.6e-73 280.8 202 64.4
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 4.1e-69 266.2 210 60.0
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-62 244.6 311 43.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.2e-62 243.8 235 53.6
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.3e-58 229.9 302 43.0
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.5e-58 228.4 198 59.1
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-57 227.3 167 65.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 7.8e-52 208.8 185 57.8
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.9e-48 195.3 416 35.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.1e-45 188.3 370 33.8
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 4.6e-44 183.0 261 44.4
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.3e-30 138.3 160 47.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.9e-30 136.3 119 61.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.2e-29 133.7 286 31.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.5e-26 124.8 644 22.2
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-25 120.6 126 51.6
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.8e-25 120.6 89 65.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.0e-24 116.7 103 57.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-20 104.0 128 46.1
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.9e-14 83.2 109 44.0
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-10 72.0 53 58.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 7.4e-10 69.3 321 24.6
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 9.6e-10 68.9 47 61.7
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 4.9e-06 56.6 35 74.3


User provided reference genes

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