Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 4.9e-100 367.9 193 100.0
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 6.1e-82 307.8 193 86.0
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 7.7e-53 211.1 220 58.2
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 5.7e-32 141.7 124 56.5
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 1.3e-28 130.6 101 63.4
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 2.3e-28 129.8 103 59.2
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 1.1e-27 127.5 100 63.0
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.5e-27 127.1 201 45.3
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 1.9e-27 126.7 103 63.1
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 2.5e-27 126.3 201 43.8
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 4.3e-27 125.6 114 57.0
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 4.3e-27 125.6 98 63.3
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 4.3e-27 125.6 114 57.0
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 5.6e-27 125.2 111 56.8
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 7.3e-27 124.8 201 43.3
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 2.1e-26 123.2 112 56.2
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 2.8e-26 122.9 101 62.4
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 2.8e-26 122.9 100 61.0
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 2.8e-26 122.9 98 62.2
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 4.7e-26 122.1 100 60.0
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 1.0e-25 120.9 175 42.9
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 1.8e-25 120.2 101 59.4
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 1.8e-25 120.2 98 60.2
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 1.8e-25 120.2 99 59.6
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 3.1e-25 119.4 92 64.1
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 6.8e-25 118.2 123 49.6
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 1.2e-24 117.5 130 53.1
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 1.2e-24 117.5 130 53.1
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 1.2e-24 117.5 106 55.7
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 1.2e-24 117.5 90 65.6
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 1.5e-24 117.1 104 56.7
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 2.0e-24 116.7 86 66.3
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 3.4e-24 115.9 112 58.9
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 3.4e-24 115.9 106 54.7
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 4.4e-24 115.5 193 40.4
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 9.8e-24 114.4 88 63.6
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 9.8e-24 114.4 88 63.6
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 9.8e-24 114.4 111 54.1
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 1.3e-23 114.0 104 55.8
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 2.9e-23 112.8 105 53.3
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 2.9e-23 112.8 98 56.1
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 2.9e-23 112.8 88 62.5
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 3.7e-23 112.5 91 63.7
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 4.9e-23 112.1 110 53.6
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 1.1e-22 110.9 100 58.0
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 1.4e-22 110.5 92 60.9
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.4e-22 110.5 97 56.7
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 3.2e-22 109.4 100 57.0
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 3.2e-22 109.4 91 62.6
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 5.4e-22 108.6 85 62.4
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 5.4e-22 108.6 131 46.6
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 2.0e-21 106.7 110 50.9
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 3.5e-21 105.9 93 60.2
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 4.6e-21 105.5 194 41.2
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 7.8e-21 104.8 173 40.5
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 5.0e-20 102.1 85 61.2
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 8.6e-20 101.3 90 57.8
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 4.3e-19 99.0 85 57.6
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 7.3e-19 98.2 85 56.5
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 7.3e-19 98.2 77 62.3
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 6.2e-18 95.1 90 54.4
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 1.4e-17 94.0 90 53.3
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.8e-17 93.6 85 56.5
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 6.8e-17 91.7 153 37.9
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 8.9e-17 91.3 68 66.2
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 2.6e-16 89.7 138 37.0
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 2.2e-15 86.7 90 50.0
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 2.2e-15 86.7 139 38.1
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 3.7e-15 85.9 96 45.8
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 3.7e-15 85.9 165 33.9
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 4.9e-15 85.5 112 42.0
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 8.3e-15 84.7 112 41.1
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 4.1e-14 82.4 112 40.2
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 4.1e-14 82.4 112 40.2
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 4.1e-14 82.4 113 46.9
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 7.1e-14 81.6 116 39.7
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 9.2e-14 81.3 117 39.3
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 1.6e-13 80.5 164 31.7
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 2.7e-13 79.7 138 35.5
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 3.5e-13 79.3 111 40.5
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 3.5e-13 79.3 138 35.5
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 3.5e-13 79.3 111 40.5
BcaB08g37196 Brassica carinata HOM05D007797 ORTHO05D009741 4.7e-10 68.9 121 34.7
SEGI_33407 Sequoiadendron giganteum HOM05D007797 ORTHO05D009741 4.4e-08 62.4 126 37.3
AagrBONN_evm.TU.Sc2ySwM_344.249 Anthoceros agrestis HOM05D007797 ORTHO05D009741 7.6e-08 61.6 117 40.2
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 2.2e-07 60.1 51 56.9
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 5.4e-06 55.5 73 43.8


User provided reference genes

Program Settings