Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 3558.5 1772 100.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2707.9 1852 73.7
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2698.3 1847 73.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2364.3 1871 66.0
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2278.4 1850 63.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2273.4 1841 63.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2272.3 1956 61.8
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2266.1 1850 62.9
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2264.2 1846 63.6
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2263.0 1846 63.5
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2261.5 1846 62.5
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2252.6 1952 60.5
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2249.2 1850 62.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2245.7 1856 62.6
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2244.5 1844 63.3
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2240.3 1847 62.8
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2233.8 1852 62.7
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2233.0 1969 60.6
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2229.9 1844 63.9
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2229.9 1811 63.7
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2229.5 1862 62.4
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2223.0 1851 62.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2213.7 1868 61.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2213.3 1857 61.9
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2211.8 1857 62.4
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2205.6 1880 61.3
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2204.5 1830 61.6
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2191.0 1835 61.6
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2191.0 1912 60.6
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2185.2 1963 59.3
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2181.0 1844 60.8
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2178.3 1719 65.4
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2177.5 1839 61.2
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2177.1 1988 58.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2175.6 1825 61.2
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2174.4 1824 61.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2172.1 1873 60.4
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2171.0 1825 61.0
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2166.0 1830 61.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2163.3 1824 60.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2157.5 1712 65.2
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2153.6 1841 60.4
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1838 60.3
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2151.3 1847 60.9
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2145.5 1847 60.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2143.6 1847 60.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2142.9 1852 59.8
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2137.8 1850 60.0
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2135.9 1903 59.5
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2131.3 1842 60.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2127.1 1823 60.8
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2120.5 1848 59.3
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2118.6 1832 59.8
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2099.3 1747 63.2
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2087.8 1844 58.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2080.4 1619 65.9
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2050.4 1843 58.2
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2049.6 1752 60.4
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2038.1 1853 58.2
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2025.8 1845 57.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2012.3 1843 57.0
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2007.6 1840 56.9
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2001.5 1965 54.5
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2000.7 1747 61.7
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1997.6 1850 57.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1997.2 1846 56.7
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1994.2 1844 56.5
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1983.0 1853 56.4
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1980.3 1834 56.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1968.7 1851 56.1
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1956.8 1857 55.7
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1952.6 1838 56.0
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1948.7 1854 55.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1944.1 1864 55.6
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1943.3 1851 55.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1934.5 1853 54.7
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1927.5 1852 55.2
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1918.7 1877 54.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1918.3 1809 57.2
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1913.3 1870 54.9
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1900.2 1468 65.9
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1852.0 1853 54.1
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1802.7 1861 52.6
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1785.0 1493 62.5
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1771.5 1902 51.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1632.1 1425 61.5
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1610.1 1535 56.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1604.3 1246 65.5
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1597.8 1234 65.6
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1570.1 1345 61.4
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1401.7 992 71.3
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1397.9 1881 43.3
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1357.4 1958 40.9
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1342.4 1359 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1328.9 1802 42.8
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1211.4 1048 61.5
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1167.9 1796 40.1
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1154.4 964 60.7
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1148.3 804 72.3
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1127.1 1180 53.1
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1088.2 1220 49.8
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1080.9 928 59.8
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 6.6e-308 1061.6 939 61.9
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 8.6e-284 981.5 2220 32.9
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 7.4e-259 898.7 909 54.3
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 2.7e-229 800.4 806 54.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 9.7e-219 765.4 856 49.2
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 5.7e-211 739.6 513 71.5
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.2e-206 723.8 745 50.7
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 2.8e-202 710.7 534 65.9
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.0e-196 692.2 524 65.6
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.7e-181 640.2 890 46.0
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.4e-177 626.7 594 58.6
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 9.2e-177 625.9 1002 40.3
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.6e-176 625.2 517 60.3
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.6e-173 615.1 633 53.4
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.4e-171 607.1 912 40.8
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.1e-160 571.6 629 51.0
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.3e-151 542.3 731 44.5
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 5.5e-145 520.4 433 61.4
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 5.6e-142 510.4 399 62.7
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 9.6e-142 509.6 373 68.6
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 4.5e-139 500.7 439 61.0
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-131 476.1 324 72.2
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 7.9e-112 410.2 309 68.9
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.8e-108 399.1 821 35.3
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.5e-99 367.9 407 53.3
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 5.5e-97 360.9 535 40.9
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 7.2e-97 360.5 374 51.6
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 4.0e-95 354.8 252 70.6
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.3e-90 339.7 514 41.1
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-89 336.7 186 87.1
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.1e-84 320.1 918 29.8
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.7e-77 295.0 390 46.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 5.4e-76 291.2 323 48.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.3e-74 286.6 411 42.3
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.8e-72 278.9 292 52.1
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 9.2e-68 263.8 346 44.8
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.4e-52 213.4 165 66.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.5e-51 208.8 348 38.2
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.7e-43 182.6 270 41.9
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 7.6e-38 164.5 101 76.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 2.9e-37 162.5 300 37.0
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.6e-35 156.8 141 55.3
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 2.7e-35 156.0 183 48.6
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 7.9e-35 154.5 151 51.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 4.3e-33 148.7 158 51.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 5.6e-33 148.3 105 65.7
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 9.6e-33 147.5 174 48.9
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 2.0e-30 139.8 122 58.2
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.7e-29 136.7 118 52.5
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 4.2e-28 132.1 199 38.2
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.3e-26 127.1 166 41.6
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 3.9e-26 125.6 165 43.6
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 5.1e-26 125.2 161 46.6
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.7e-26 124.8 104 61.5
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.9e-25 123.2 103 62.1
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.3e-25 122.1 163 42.3
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 4.8e-24 118.6 128 47.7
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.9e-20 106.7 158 43.7
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 3.2e-20 105.9 105 53.3
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 1.2e-19 104.0 124 48.4
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 1.2e-19 104.0 451 23.7
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.6e-19 103.6 54 81.5
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 2.7e-19 102.8 83 56.6
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 3.0e-18 99.4 132 38.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.0e-18 99.4 75 58.7
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 3.3e-17 95.9 108 46.3
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 4.8e-16 92.0 71 67.6
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.4e-15 90.5 96 51.0
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 6.9e-15 88.2 74 60.8
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 9.0e-15 87.8 89 50.6
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.6e-14 86.3 211 28.0
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 9.3e-12 77.8 71 63.4
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 1.1e-09 70.9 69 47.8
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-09 70.5 86 47.7
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 7.4e-09 68.2 66 47.0
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 4.8e-08 65.5 99 45.5
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 3.1e-07 62.8 58 62.1
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.0e-06 60.1 38 73.7
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 5.9e-06 58.5 53 52.8


User provided reference genes

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