Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G13991 Striga asiatica HOM05D011902 ORTHO05D405618 3.9e-108 394.8 201 100.0
SGA_v2.0_scaffold101G29776 Striga asiatica HOM05D011902 ORTHO05D404471 1.7e-87 326.2 202 85.6
SGA_v2.0_scaffold57G20179 Striga asiatica HOM05D011902 ORTHO05D400977 5.2e-44 181.8 98 94.9
SGA_v2.0_scaffold480G52304 Striga asiatica HOM05D011902 ORTHO05D001718 7.1e-33 144.8 150 54.7
SGA_v2.0_scaffold333G49000 Striga asiatica HOM05D000736 ORTHO05D002171 6.6e-31 138.3 101 73.3
SGA_v2.0_scaffold34G13598 Striga asiatica HOM05D011902 ORTHO05D399664 3.2e-25 119.4 206 42.2
SGA_v2.0_scaffold247G44842 Striga asiatica HOM05D011902 ORTHO05D401553 6.2e-21 105.1 65 76.9
SGA_v2.0_scaffold110G31310 Striga asiatica HOM05D011902 ORTHO05D406673 6.4e-18 95.1 62 72.6
SGA_v2.0_scaffold186G40193 Striga asiatica HOM05D015626 ORTHO05D007515 3.2e-17 92.8 44 95.5
SGA_v2.0_scaffold288G47245 Striga asiatica HOM05D000010 ORTHO05D004316 4.2e-17 92.4 69 75.4
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 5.4e-17 92.0 186 43.5
SGA_v2.0_scaffold353G49705 Striga asiatica HOM05D011902 ORTHO05D399391 1.7e-15 87.0 117 59.8
SGA_v2.0_scaffold189G40338 Striga asiatica HOM05D011902 ORTHO05D404946 2.6e-11 73.2 34 100.0
SGA_v2.0_scaffold330G48905 Striga asiatica HOM05D000276 ORTHO05D037776 4.2e-09 65.9 44 70.5
SGA_v2.0_scaffold28G11827 Striga asiatica HOM05D053379 ORTHO05D037776 5.4e-09 65.5 44 68.2
TPR.G20162 Trifolium pratense HOM05D000276 ORTHO05D004241 1.2e-08 64.3 34 85.3
Ah.11g043220 Amaranthus hybridus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Ah.11g043240 Amaranthus hybridus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
arahy.Tifrunner.gnm1.ann1.LWQV1C Arachis hypogaea HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
arahy.Tifrunner.gnm1.ann1.P4XZCB Arachis hypogaea HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CANSAT25G0548 Cannabis sativa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CANSAT25G0556 Cannabis sativa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CAN.G1226.42 Capsicum annuum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Cfa018182 Carpinus fangiana HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CiPaw.15G081600 Carya illinoinensis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CiPaw.16G060400 Carya illinoinensis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CDE12G0026 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
AUR62033853 Chenopodium quinoa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
AUR62041673 Chenopodium quinoa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Ca_13359_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
ClCG08G014860 Citrullus lanatus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Haze_17936 Corylus avellana HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
MELO3C010960.2 Cucumis melo HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
CsaV3_2G028900 Cucumis sativus L. HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
DCAR_009970 Daucus carota HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
ECA232G2769 Erigeron canadensis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Migut.C00752 Erythranthe guttata HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Eucgr.F01586 Eucalyptus grandis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
FvH4_2g39570 Fragaria vesca HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
FAN15G3433 Fragaria x ananassa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
FAN20G0466 Fragaria x ananassa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
FAN27G0463 Fragaria x ananassa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Glyma.09G161300 Glycine max HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Glyma.14G073000 Glycine max HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Glyma.17G252100 Glycine max HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Gohir.A05G258600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 86 50.0
Lsat_1_v5_gn_4_117781 Lactuca sativa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Lj4A788G55 Lonicera japonica HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Lj5g0000748 Lotus japonicus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Lalb_Chr22g0354681 Lupinus albus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Lalb_Chr24g0398911 Lupinus albus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
MD08G1028900 Malus domestica HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Manes.05G157400 Manihot esculenta HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Manes.18G022500 Manihot esculenta HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Medtr1g022410 Medicago truncatula HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Nitab4.5_0001091g0040 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Nitab4.5_0003265g0090 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Nitab4.5_0004802g0030 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Nitab4.5_0008031g0050 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Oeu018215.1 Olea europaea HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PSO063G4880 Papaver somniferum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PSO170G6685 Papaver somniferum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PSO210G4790 Papaver somniferum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PSO409G0046 Papaver somniferum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Peaxi162Scf00064g00526 Petunia axillaris HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Peaxi162Scf00140g00018 Petunia axillaris HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Phvul.001G013000 Phaseolus vulgaris HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Psat6g008360 Pisum sativum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Potri.002G033900 Populus trichocarpa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Potri.005G229200 Populus trichocarpa HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Prupe.1G376700 Prunus persica HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PGR083G0234 Punica granatum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
RcHm_v2.0_Chr6g0301351 Rosa chinensis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sabra02G0027200 Salix brachista HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sabra05G0177100 Salix brachista HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sed0012133 Sechium edule HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sed0027223 Sechium edule HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Hund26587 Selenicereus undatus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Hund26588 Selenicereus undatus HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sc02g0005930 Simmondsia chinensis HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Solyc04g080590.4 Solanum lycopersicum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Sopen04g034180 Solanum pennellii HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PGSC0003DMG400003740 Solanum tuberosum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
PGSC0003DMG400015462 Solanum tuberosum HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
TWI12G0517 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
TWI36G0782 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
unitig_32.g11150 Utricularia gibba HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
VMungo0464G0586 Vigna mungo HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
VMungo0647G0747 Vigna mungo HOM05D000276 ORTHO05D004241 1.6e-08 63.9 34 85.3
Atru.chr13.441 Acer truncatum HOM05D000276 ORTHO05D004241 2.1e-08 63.5 88 48.9
SEGI_24504 Sequoiadendron giganteum HOM05D000276 ORTHO05D004241 2.1e-08 63.5 86 48.8
SGA_v2.0_scaffold204G41597 Striga asiatica HOM05D015626 ORTHO05D019382 2.7e-08 63.2 106 43.4
ATR0693G251 Amborella trichopoda HOM05D000276 ORTHO05D004241 3.5e-08 62.8 88 47.7
Duzib093G1628 Durio zibethinus HOM05D000276 ORTHO05D004241 3.5e-08 62.8 86 48.8
Aa31LG9G12860 Aethionema arabicum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
AL1G53390 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
AL8G18280 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
AT1G47250 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
AT5G42790 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaB04g17541 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaB07g31044 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaC02g10805 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaC04g21970 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaC06g31747 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BcaC07g37230 Brassica carinata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
A02p27580 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
A08p05870 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
A09p19980 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
C04p24960 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
C08p06510 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
C09p25340 Brassica napus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BolC2t10372H Brassica oleracea HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BolC4t23995H Brassica oleracea HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BolC8t47498H Brassica oleracea HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BolC9t55433H Brassica oleracea HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BraA02t07791Z Brassica rapa HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
BraA08t32589Z Brassica rapa HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Carub.0001s3602 Capsella rubella HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Carub.0008s0611 Capsella rubella HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
CARHR036800 Cardamine hirsuta HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
CARHR181760 Cardamine hirsuta HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Ciclev10002110m.g Citrus clementina HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
COL.COLO4_26280 Corchorus olitorius HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Dinv39439 Davidia involucrata HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 48.9
Duzib041G0309 Durio zibethinus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Thhalv10003255m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Thhalv10011712m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Gohir.A01G114600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gohir.A06G009000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gohir.D01G103000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gohir.D05G260300 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gohir.D06G004500 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gorai.002G126700 Gossypium raimondii HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gorai.009G272200 Gossypium raimondii HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
Gorai.010G009100 Gossypium raimondii HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
HanXRQChr09g0269001 Helianthus annuus HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Hma1.2p1_0203F.1_g086175 Hydrangea macrophylla HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 48.9
MBI10_g06733_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 47.7
Sp1g34380 Schrenkiella parvula HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Sp2g07450 Schrenkiella parvula HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
THA.LOC104801918 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
THA.LOC104812561 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 4.6e-08 62.4 34 82.4
Thecc.08G030100 Theobroma cacao HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 48.8
TAR376G0460 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 47.7
TAR381G1175 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 47.7
TAR628G0879 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.6e-08 62.4 88 47.7
unitig_748.g7753 Utricularia gibba HOM05D000276 ORTHO05D004241 4.6e-08 62.4 86 47.7
Actinidia15345 Actinidia chinensis HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
Actinidia22528 Actinidia chinensis HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
MSTRG.22305 Avicennia marina HOM05D000276 ORTHO05D004241 6.0e-08 62.0 86 48.8
EL10Ac7g16580 Beta vulgaris HOM05D000276 ORTHO05D004241 6.0e-08 62.0 86 48.8
CSS0017933 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
CSS0039888 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
CSS0046824 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
CDE04G1556 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 6.0e-08 62.0 88 47.7
DCAR_022475 Daucus carota HOM05D000276 ORTHO05D004241 6.0e-08 62.0 88 47.7
HanXRQChr16g0501521 Helianthus annuus HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
vmacro21660 Vaccinium macrocarpon HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
Zm00001eb231490 Zea mays HOM05D000276 ORTHO05D004241 6.0e-08 62.0 34 82.4
MSTRG.1265 Avicennia marina HOM05D000276 ORTHO05D004241 7.9e-08 61.6 86 47.7
SalBow7G3764 Salvia bowleyana HOM05D000276 ORTHO05D004241 7.9e-08 61.6 86 47.7
SGA_v2.0_scaffold11G05817 Striga asiatica HOM05D000276 ORTHO05D004241 7.9e-08 61.6 86 47.7
SGA_v2.0_scaffold201G41398 Striga asiatica HOM05D000276 ORTHO05D004241 7.9e-08 61.6 86 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2334 Anthoceros agrestis HOM05D000276 ORTHO05D004241 1.0e-07 61.2 86 46.5
Duzib116G0719 Durio zibethinus HOM05D000276 ORTHO05D004241 1.0e-07 61.2 86 47.7
QL02p009221 Quercus lobata HOM05D000276 ORTHO05D004241 1.0e-07 61.2 34 79.4
SGA_v2.0_scaffold636G53301 Striga asiatica HOM05D011902 ORTHO05D402207 1.3e-07 60.8 89 47.2
HPP92_000285 Vanilla planifolia HOM05D000276 ORTHO05D004241 1.8e-07 60.5 88 46.6
Aqoxy5G01588 Aquilegia oxysepala HOM05D000276 ORTHO05D004241 2.3e-07 60.1 88 46.6
SMO337G0086 Selaginella moellendorffii HOM05D000276 ORTHO05D004241 2.3e-07 60.1 34 82.4
CBR_g54888 Chara braunii HOM05D000276 ORTHO05D004241 3.0e-07 59.7 90 46.7
Mapoly0138s0042 Marchantia polymorpha HOM05D000276 ORTHO05D004241 3.9e-07 59.3 86 46.5
BcaC03g16506 Brassica carinata HOM05D000276 ORTHO05D004241 5.1e-07 58.9 34 79.4
C02p43230 Brassica napus HOM05D000276 ORTHO05D004241 5.1e-07 58.9 34 79.4
Pp3c16_23890 Physcomitrium patens HOM05D000276 ORTHO05D004241 5.1e-07 58.9 86 46.5
Pp3c25_15330 Physcomitrium patens HOM05D000276 ORTHO05D004241 5.1e-07 58.9 86 46.5
Cpa.g.sc800.1 Carica papaya HOM05D000276 ORTHO05D004241 6.7e-07 58.5 86 45.3
EL10Ac9g20744 Beta vulgaris HOM05D001804 ORTHO05D004241 1.5e-06 57.4 34 76.5
Aqoxy7G02700 Aquilegia oxysepala HOM05D000276 ORTHO05D004241 5.6e-06 55.5 33 75.8


User provided reference genes

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