Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.5e-186 654.8 339 100.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 4.7e-138 495.0 341 77.1
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 4.9e-135 485.0 340 76.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.3e-123 445.7 260 86.5
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.2e-120 437.2 303 76.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.6e-117 426.8 256 83.6
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 6.0e-117 424.9 316 70.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 5.0e-116 421.8 317 69.7
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 8.6e-116 421.0 261 82.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 8.6e-116 421.0 316 69.9
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.5e-115 420.2 261 82.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.5e-115 420.2 334 68.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.5e-115 419.5 319 68.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 3.3e-115 419.1 272 78.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 4.3e-115 418.7 284 76.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.2e-114 417.2 299 73.6
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.6e-114 416.8 313 69.6
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.1e-114 416.4 261 79.7
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.8e-114 416.0 259 80.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.8e-114 416.0 318 68.2
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 8.1e-114 414.5 273 75.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.1e-113 414.1 261 79.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.4e-113 413.7 260 80.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.4e-113 413.7 245 82.9
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.1e-113 412.5 287 74.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.0e-113 412.1 339 65.2
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.0e-113 412.1 256 80.1
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 6.8e-113 411.4 314 69.1
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.2e-112 410.6 274 76.3
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.5e-112 410.2 260 78.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.0e-112 409.8 340 65.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.6e-112 409.5 307 71.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.6e-112 409.5 253 82.6
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 3.4e-112 409.1 353 64.3
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.4e-112 408.7 269 75.1
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 4.4e-112 408.7 340 67.6
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 9.9e-112 407.5 264 78.4
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.7e-111 406.8 260 78.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.2e-111 406.4 258 77.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.7e-111 405.6 408 58.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 6.4e-111 404.8 309 69.6
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.4e-110 403.7 277 74.0
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-110 403.3 252 78.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.4e-110 402.9 255 78.8
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 2.4e-110 402.9 325 66.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 4.1e-110 402.1 304 70.1
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 9.2e-110 401.0 257 77.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.6e-109 400.2 252 78.6
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.1e-109 399.8 327 66.7
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.7e-109 399.4 265 75.8
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.7e-109 399.4 313 67.4
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 3.5e-109 399.1 315 67.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 6.0e-109 398.3 338 64.8
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 6.0e-109 398.3 259 77.2
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.3e-108 397.1 294 70.7
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.3e-108 397.1 264 73.9
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.3e-108 397.1 255 76.5
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 3.9e-108 395.6 274 73.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 5.1e-108 395.2 259 75.3
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 6.6e-108 394.8 261 75.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-107 394.0 258 76.7
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.1e-107 394.0 274 72.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.5e-107 392.9 254 78.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.3e-107 392.5 256 76.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.2e-106 390.6 367 61.3
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.2e-106 390.6 252 76.6
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.1e-106 389.8 255 76.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.1e-106 387.9 256 75.8
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.4e-105 387.1 251 75.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.4e-105 386.3 331 63.7
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.6e-104 382.9 259 75.7
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.4e-104 382.5 265 74.3
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.6e-104 381.3 275 71.6
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.4e-103 378.3 261 72.4
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.4e-102 376.3 315 63.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.2e-102 375.9 305 66.2
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 5.4e-102 375.2 292 66.1
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 7.1e-102 374.8 266 71.1
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.1e-101 373.2 249 75.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.1e-101 373.2 265 70.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.7e-101 372.9 257 73.2
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.7e-101 372.9 257 73.2
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.7e-101 372.9 305 66.2
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.7e-101 372.9 273 70.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.8e-101 371.3 261 73.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.3e-100 370.5 253 73.1
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.7e-100 370.2 310 63.5
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.0e-100 369.4 333 60.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.1e-99 367.5 252 70.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.1e-99 367.5 256 73.0
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.1e-97 360.9 285 62.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 9.9e-96 354.4 253 69.6
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.5e-91 339.7 251 68.1
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.3e-90 337.4 251 67.3
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.6e-90 335.9 260 65.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 6.2e-90 335.1 288 61.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 8.1e-90 334.7 250 67.2
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 6.7e-84 315.1 210 74.3
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 9.6e-83 311.2 330 55.2
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.6e-82 310.5 202 76.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 7.4e-75 285.0 276 55.8
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.7e-74 282.7 265 55.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.1e-70 268.5 275 50.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.6e-69 267.3 274 48.5
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.3e-68 264.2 260 51.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-65 254.2 165 75.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.4e-59 231.9 182 68.1
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.5e-54 216.9 142 73.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.2e-54 216.5 203 60.1
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 4.2e-54 216.1 244 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.1e-53 213.8 202 53.5
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.4e-51 206.1 175 61.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.8e-50 203.4 212 56.1
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.2e-46 189.5 149 65.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 9.1e-41 171.8 184 54.9
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.6e-40 171.0 112 75.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 2.0e-40 170.6 163 57.7
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.0e-39 168.3 111 73.0
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-38 164.1 184 57.1
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.0e-36 156.4 111 69.4
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 9.7e-35 151.8 111 67.6
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.6e-32 144.4 109 68.8
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.5e-32 142.9 104 72.1
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.9e-32 142.5 123 57.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.2e-30 136.7 103 65.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.8e-28 128.6 74 85.1
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 4.4e-27 126.3 91 73.6
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.0e-24 117.5 249 30.9
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-24 117.1 80 71.2
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 5.9e-24 115.9 81 70.4
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.5e-19 101.3 168 38.1
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.6e-19 100.5 89 59.6
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-18 98.2 92 57.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.7e-16 90.5 56 80.4
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 7.8e-16 89.0 56 76.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.7e-15 87.8 50 82.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.5e-14 84.7 99 50.5
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.8e-13 80.5 183 29.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.2e-12 76.3 147 33.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.4e-11 73.2 147 32.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 3.7e-10 70.1 183 28.4
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.9e-10 69.7 61 60.7
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 4.9e-10 69.7 68 54.4
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.4e-09 68.2 42 69.0
SalBow1G0093 Salvia bowleyana HOM05D005205 ORTHO05D006155 9.5e-06 55.5 53 56.6


User provided reference genes

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