Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold347G49569 Striga asiatica HOM05D021674 ORTHO05D402548 7.4e-98 360.5 182 100.0
SGA_v2.0_scaffold42G15991 Striga asiatica HOM05D021674 ORTHO05D404867 4.9e-65 251.5 165 81.8
SGA_v2.0_scaffold63G21765 Striga asiatica HOM05D021674 ORTHO05D406589 4.9e-65 251.5 165 81.8
SGA_v2.0_scaffold8G04643 Striga asiatica HOM05D021674 ORTHO05D399068 3.5e-23 112.5 182 45.6
Migut.A00029 Erythranthe guttata HOM05D000407 ORTHO05D001717 1.1e-11 74.3 46 80.4
SGA_v2.0_scaffold20G09105 Striga asiatica HOM05D000407 ORTHO05D001717 2.4e-11 73.2 46 78.3
SalBow4G0567 Salvia bowleyana HOM05D000407 ORTHO05D001717 4.0e-11 72.4 52 69.2
MSTRG.26015 Avicennia marina HOM05D000407 ORTHO05D001717 6.9e-11 71.6 46 76.1
Oeu010899.1 Olea europaea HOM05D000407 ORTHO05D001717 2.0e-10 70.1 46 73.9
Dinv05000 Davidia involucrata HOM05D000407 ORTHO05D001717 9.9e-10 67.8 46 71.7
Aqoxy7G03630 Aquilegia oxysepala HOM05D000407 ORTHO05D001717 1.7e-09 67.0 46 69.6
Potri.006G256200 Populus trichocarpa HOM05D000407 ORTHO05D001717 1.7e-09 67.0 46 69.6
Nitab4.5_0004664g0070 Nicotiana tabacum HOM05D000407 ORTHO05D001717 2.2e-09 66.6 46 69.6
Sabra18G0028300 Salix brachista HOM05D000407 ORTHO05D001717 2.2e-09 66.6 46 69.6
Dinv18206 Davidia involucrata HOM05D000407 ORTHO05D001717 2.9e-09 66.2 46 69.6
Potri.018G025800 Populus trichocarpa HOM05D000407 ORTHO05D001717 3.8e-09 65.9 46 67.4
Sabra06G0200400 Salix brachista HOM05D000407 ORTHO05D001717 3.8e-09 65.9 46 67.4
HPP92_017268 Vanilla planifolia HOM05D000407 ORTHO05D001717 3.8e-09 65.9 46 69.6
HPP92_017277 Vanilla planifolia HOM05D000407 ORTHO05D001717 3.8e-09 65.9 46 69.6
Cc08_g00470 Coffea canephora HOM05D000407 ORTHO05D001717 4.9e-09 65.5 46 67.4
CsaV3_3G046300 Cucumis sativus L. HOM05D000407 ORTHO05D001717 4.9e-09 65.5 46 63.0
MELO3C003711.2 Cucumis melo HOM05D000407 ORTHO05D001717 6.4e-09 65.1 46 60.9
Nitab4.5_0002042g0020 Nicotiana tabacum HOM05D000407 ORTHO05D001717 6.4e-09 65.1 46 67.4
ATR0800G173 Amborella trichopoda HOM05D000407 ORTHO05D001717 8.4e-09 64.7 46 67.4
CSS0046690 Camellia sinensis var. sinensis HOM05D000407 ORTHO05D001717 8.4e-09 64.7 46 69.6
QL02p021331 Quercus lobata HOM05D000407 ORTHO05D001717 8.4e-09 64.7 46 67.4
Sed0017679 Sechium edule HOM05D000407 ORTHO05D001717 8.4e-09 64.7 46 63.0
CSS0010204 Camellia sinensis var. sinensis HOM05D000407 ORTHO05D001717 1.1e-08 64.3 46 67.4
CSS0023688 Camellia sinensis var. sinensis HOM05D000407 ORTHO05D001717 1.1e-08 64.3 46 67.4
CANSAT35G0300 Cannabis sativa HOM05D000407 ORTHO05D001717 1.1e-08 64.3 46 67.4
ClCG05G016780 Citrullus lanatus HOM05D000407 ORTHO05D001717 1.1e-08 64.3 46 63.0
CiPaw.08G010300 Carya illinoinensis HOM05D000407 ORTHO05D001717 1.4e-08 63.9 46 67.4
PSO017G3169 Papaver somniferum HOM05D000407 ORTHO05D001717 1.4e-08 63.9 46 65.2
PSO170G1764 Papaver somniferum HOM05D000407 ORTHO05D001717 1.4e-08 63.9 46 65.2
Phvul.008G201600 Phaseolus vulgaris HOM05D000407 ORTHO05D001717 1.4e-08 63.9 46 67.4
DCAR_006211 Daucus carota HOM05D000407 ORTHO05D001717 1.9e-08 63.5 46 67.4
HanXRQChr05g0134871 Helianthus annuus HOM05D000407 ORTHO05D001717 1.9e-08 63.5 46 65.2
vmacro11182 Vaccinium macrocarpon HOM05D000407 ORTHO05D001717 1.9e-08 63.5 46 67.4
CiPaw.07G224600 Carya illinoinensis HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 65.2
Manes.03G013400 Manihot esculenta HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 65.2
Nn2g12123 Nelumbo nucifera HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 67.4
Nitab4.5_0005785g0030 Nicotiana tabacum HOM05D000407 ORTHO05D001717 2.4e-08 63.2 51 60.8
Prupe.1G482600 Prunus persica HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 65.2
unitig_26.g9281 Utricularia gibba HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 65.2
vmacro05167 Vaccinium macrocarpon HOM05D000407 ORTHO05D001717 2.4e-08 63.2 46 65.2
Haze_21499 Corylus avellana HOM05D000407 ORTHO05D001717 3.2e-08 62.8 46 65.2
PGR044G1325 Punica granatum HOM05D000407 ORTHO05D001717 3.2e-08 62.8 46 65.2
Thecc.09G022600 Theobroma cacao HOM05D000407 ORTHO05D001717 3.2e-08 62.8 46 65.2
TWI63G1401 Tripterygium wilfordii HOM05D000407 ORTHO05D001717 3.2e-08 62.8 46 65.2
Glyma.02G279100 Glycine max HOM05D000407 ORTHO05D001717 4.2e-08 62.4 46 65.2
Hund09286 Selenicereus undatus HOM05D000407 ORTHO05D001717 4.2e-08 62.4 46 65.2
Cfa013129 Carpinus fangiana HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 65.2
Dinv36476 Davidia involucrata HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 63.0
Duzib168G1525 Durio zibethinus HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 65.2
Lj7A724T58 Lonicera japonica HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 65.2
Nn8g39557 Nelumbo nucifera HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 65.2
Sed0025937 Sechium edule HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 60.9
THA.LOC104803650 Tarenaya hassleriana HOM05D000407 ORTHO05D001717 5.5e-08 62.0 46 63.0
EL10Ac8g18729 Beta vulgaris HOM05D000407 ORTHO05D001717 7.1e-08 61.6 46 63.0
Carub.0007s0841 Capsella rubella HOM05D000407 ORTHO05D001717 7.1e-08 61.6 46 63.0
COL.COLO4_18877 Corchorus olitorius HOM05D000407 ORTHO05D001717 7.1e-08 61.6 46 63.0
TAR625G0015 Trochodendron aralioides HOM05D000407 ORTHO05D001717 7.1e-08 61.6 46 63.0
Aa31LG4G9810 Aethionema arabicum HOM05D000407 ORTHO05D001717 9.3e-08 61.2 46 60.9
Duzib187G1787 Durio zibethinus HOM05D000407 ORTHO05D001717 9.3e-08 61.2 46 63.0
VMungo0647G0524 Vigna mungo HOM05D000407 ORTHO05D001717 9.3e-08 61.2 46 63.0
GSVIVG01035876001 Vitis vinifera HOM05D000407 ORTHO05D001717 9.3e-08 61.2 46 63.0
AL7G19710 Arabidopsis lyrata HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
BcaC01g01039 Brassica carinata HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
A08p18340 Brassica napus HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
BolC3t21058H Brassica oleracea HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
BraA08t33791Z Brassica rapa HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
CARHR240080 Cardamine hirsuta HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
Eucgr.C02758 Eucalyptus grandis HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 65.2
Thhalv10026196m.g Eutrema salsugineum HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
FAN15G0146 Fragaria x ananassa HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 63.0
Lsat_1_v5_gn_5_30141 Lactuca sativa HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 63.0
MD08G1156200 Malus domestica HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 63.0
MD15G1126900 Malus domestica HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 63.0
Nitab4.5_0000109g0410 Nicotiana tabacum HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 65.2
Sp7g29940 Schrenkiella parvula HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
Solyc06g065950.4 Solanum lycopersicum HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 65.2
Sopen06g024430 Solanum pennellii HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 65.2
PGSC0003DMG400026142 Solanum tuberosum HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 65.2
THA.LOC104818614 Tarenaya hassleriana HOM05D000407 ORTHO05D001717 1.2e-07 60.8 46 60.9
Cpa.g.sc217.14 Carica papaya HOM05D000407 ORTHO05D001717 1.6e-07 60.5 46 63.0
Medtr5g089370 Medicago truncatula HOM05D000407 ORTHO05D001717 1.6e-07 60.5 46 63.0
TAR383G0387 Trochodendron aralioides HOM05D000407 ORTHO05D001717 1.6e-07 60.5 46 60.9
CAN.G1475.11 Capsicum annuum HOM05D000407 ORTHO05D001717 2.1e-07 60.1 46 63.0
Actinidia14595 Actinidia chinensis HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 65.2
arahy.Tifrunner.gnm1.ann1.PAAG12 Arachis hypogaea HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
arahy.Tifrunner.gnm1.ann1.RR5P7Z Arachis hypogaea HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
Lsat_1_v5_gn_6_20721 Lactuca sativa HOM05D000407 ORTHO05D001717 2.7e-07 59.7 47 59.6
Manes.16G123300 Manihot esculenta HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
Sc09g0010230 Simmondsia chinensis HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 63.0
Sc18g0000330 Simmondsia chinensis HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
TPR.G16414 Trifolium pratense HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
TWI34G1781 Tripterygium wilfordii HOM05D000407 ORTHO05D001717 2.7e-07 59.7 46 60.9
ECA246G4751 Erigeron canadensis HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 60.9
FvH4_2g28860 Fragaria vesca HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 60.9
FAN20G2239 Fragaria x ananassa HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 60.9
FAN24G2495 Fragaria x ananassa HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 60.9
Glyma.14G035500 Glycine max HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 63.0
Psat0s1021g0040 Pisum sativum HOM05D000407 ORTHO05D001717 3.5e-07 59.3 46 60.9
EL10Ac2g04196 Beta vulgaris HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 58.7
AUR62011179 Chenopodium quinoa HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 60.9
Gohir.A07G029200 Gossypium hirsutum HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 60.9
Gohir.D07G033200 Gossypium hirsutum HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 60.9
Gorai.001G034800 Gossypium raimondii HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 60.9
Lsat_1_v5_gn_1_43440 Lactuca sativa HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 58.7
Lalb_Chr04g0249241 Lupinus albus HOM05D000407 ORTHO05D001717 4.6e-07 58.9 46 58.7
AUR62013304 Chenopodium quinoa HOM05D000407 ORTHO05D001717 6.0e-07 58.5 46 60.9
Ca_06197_v3 Cicer arietinum L. HOM05D000407 ORTHO05D001717 6.0e-07 58.5 46 56.5
LjContig00564g0005993 Lotus japonicus HOM05D000407 ORTHO05D001717 6.0e-07 58.5 46 58.7
TAR636G2697 Trochodendron aralioides HOM05D000407 ORTHO05D001717 6.0e-07 58.5 46 60.9
AT4G32150 Arabidopsis thaliana HOM05D000407 ORTHO05D001717 7.9e-07 58.2 46 58.7
Gohir.A13G181200 Gossypium hirsutum HOM05D000407 ORTHO05D001717 7.9e-07 58.2 46 58.7
Gohir.D13G189000 Gossypium hirsutum HOM05D000407 ORTHO05D001717 7.9e-07 58.2 46 58.7
Gorai.013G214400 Gossypium raimondii HOM05D000407 ORTHO05D001717 7.9e-07 58.2 46 58.7
HanXRQChr02g0050351 Helianthus annuus HOM05D000407 ORTHO05D001717 7.9e-07 58.2 46 58.7
Ah.16g104560 Amaranthus hybridus HOM05D000407 ORTHO05D001717 1.0e-06 57.8 46 56.5
Atru.chr7.2454 Acer truncatum HOM05D000407 ORTHO05D001717 1.3e-06 57.4 46 56.5
CDE02G2171 Ceratophyllum demersum HOM05D000407 ORTHO05D001717 1.3e-06 57.4 46 58.7
Ciclev10009428m.g Citrus clementina HOM05D000407 ORTHO05D001717 1.3e-06 57.4 46 58.7
Aa31LG2G17810 Aethionema arabicum HOM05D000407 ORTHO05D001717 1.8e-06 57.0 46 56.5
FAN27G0111 Fragaria x ananassa HOM05D000407 ORTHO05D001717 1.8e-06 57.0 46 58.7
Lj8A721T47 Lonicera japonica HOM05D000407 ORTHO05D001717 1.8e-06 57.0 46 60.9
Gohir.D05G057800 Gossypium hirsutum HOM05D000407 ORTHO05D001717 2.3e-06 56.6 46 60.9
Gorai.009G058900 Gossypium raimondii HOM05D000407 ORTHO05D001717 2.3e-06 56.6 46 60.9
RcHm_v2.0_Chr6g0297631 Rosa chinensis HOM05D000407 ORTHO05D001717 2.3e-06 56.6 46 58.7
AT2G25340 Arabidopsis thaliana HOM05D000407 ORTHO05D001717 3.0e-06 56.2 46 56.5
BcaB03g12732 Brassica carinata HOM05D000407 ORTHO05D001717 3.0e-06 56.2 47 59.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.0e-06 56.2 47 59.6
BolC1t00676H Brassica oleracea HOM05D000407 ORTHO05D001717 3.0e-06 56.2 47 59.6
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.0e-06 56.2 47 59.6
Thhalv10014617m.g Eutrema salsugineum HOM05D000407 ORTHO05D001717 3.0e-06 56.2 47 59.6
HanXRQChr11g0353731 Helianthus annuus HOM05D000407 ORTHO05D001717 3.0e-06 56.2 46 60.9
Sp6g32360 Schrenkiella parvula HOM05D000407 ORTHO05D001717 3.0e-06 56.2 47 59.6
BcaNung03141 Brassica carinata HOM05D000407 ORTHO05D001717 5.1e-06 55.5 47 57.4
Atru.chr7.1953 Acer truncatum HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 55.3
Aa31LG3G16010 Aethionema arabicum HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 57.4
AL6G21770 Arabidopsis lyrata HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 57.4
BcaB08g37085 Brassica carinata HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
BcaC04g19256 Brassica carinata HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
A10p26560 Brassica napus HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
C09p65710 Brassica napus HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
BolC9t59394H Brassica oleracea HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
BraA10t44713Z Brassica rapa HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
Cfa021933 Carpinus fangiana HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6
Haze_25500 Corylus avellana HOM05D000407 ORTHO05D001717 6.7e-06 55.1 47 59.6


User provided reference genes

Program Settings