Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3389G54328 Striga asiatica HOM05D006818 ORTHO05D007177 8.7e-113 410.2 194 100.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 4.8e-63 245.0 194 66.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 8.1e-10 68.2 46 76.1
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 6.9e-09 65.1 46 69.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 7.6e-08 61.6 144 31.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 9.9e-08 61.2 46 65.2
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.9e-07 59.7 46 60.9
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 2.9e-07 59.7 37 73.0
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 8.4e-07 58.2 37 70.3
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 8.4e-07 58.2 37 70.3
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.4e-06 57.4 63 46.0
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 2.4e-06 56.6 68 45.6
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 2.4e-06 56.6 37 67.6
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 2.4e-06 56.6 37 67.6
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 3.2e-06 56.2 68 45.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 3.2e-06 56.2 68 45.6
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 3.2e-06 56.2 37 67.6
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 3.2e-06 56.2 37 67.6
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 4.2e-06 55.8 46 63.0
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 5.4e-06 55.5 47 57.4
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 5.4e-06 55.5 37 64.9
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 7.1e-06 55.1 37 64.9
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 7.1e-06 55.1 37 64.9
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 7.1e-06 55.1 37 64.9
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 7.1e-06 55.1 37 64.9
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 7.1e-06 55.1 37 64.9
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 9.3e-06 54.7 37 64.9
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 9.3e-06 54.7 37 64.9
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 9.3e-06 54.7 37 64.9


User provided reference genes

Program Settings