Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold337G49175 Striga asiatica HOM05D001120 ORTHO05D002943 5.9e-58 227.3 109 100.0
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 1.3e-25 119.8 62 91.9
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 6.1e-23 110.9 63 79.4
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 1.0e-22 110.2 63 82.5
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 1.5e-21 106.3 62 75.8
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 3.4e-21 105.1 63 74.6
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 4.4e-21 104.8 62 75.8
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 4.4e-21 104.8 62 75.8
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 4.4e-21 104.8 88 62.5
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 5.7e-21 104.4 63 74.6
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 5.7e-21 104.4 63 74.6
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 5.7e-21 104.4 63 74.6
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 7.5e-21 104.0 63 71.4
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 7.5e-21 104.0 63 71.4
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 9.8e-21 103.6 82 62.2
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 9.8e-21 103.6 63 71.4
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 1.7e-20 102.8 63 71.4
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 1.7e-20 102.8 63 74.6
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 2.2e-20 102.4 63 71.4
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 2.8e-20 102.1 63 71.4
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 2.8e-20 102.1 63 74.6
CSS0024775 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 71.4
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 3.7e-20 101.7 63 69.8
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 71.4
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 3.7e-20 101.7 91 54.9
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 69.8
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 71.4
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 69.8
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 69.8
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 3.7e-20 101.7 63 69.8
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 4.9e-20 101.3 63 73.0
CSS0048333 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 6.3e-20 100.9 63 71.4
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 6.3e-20 100.9 63 71.4
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 6.3e-20 100.9 63 69.8
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 6.3e-20 100.9 63 69.8
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 6.3e-20 100.9 63 66.7
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 8.3e-20 100.5 63 68.3
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 8.3e-20 100.5 63 66.7
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 8.3e-20 100.5 85 56.5
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 8.3e-20 100.5 63 73.0
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 1.1e-19 100.1 63 66.7
Oeu021740.1 Olea europaea HOM05D001120 ORTHO05D002943 1.1e-19 100.1 63 71.4
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 1.4e-19 99.8 63 71.4
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 1.4e-19 99.8 62 72.6
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 1.4e-19 99.8 63 69.8
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 1.8e-19 99.4 63 68.3
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 1.8e-19 99.4 62 69.4
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.8e-19 99.4 63 73.0
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 2.4e-19 99.0 63 69.8
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 2.4e-19 99.0 62 69.4
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 3.1e-19 98.6 63 71.4
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 4.1e-19 98.2 63 66.7
Dinv08003 Davidia involucrata HOM05D001120 ORTHO05D002943 4.1e-19 98.2 87 56.3
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 4.1e-19 98.2 62 72.6
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 4.1e-19 98.2 80 60.0
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 5.4e-19 97.8 63 66.7
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 7.0e-19 97.4 62 71.0
vmacro06756 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 7.0e-19 97.4 101 51.5
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 7.0e-19 97.4 62 69.4
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 9.2e-19 97.1 63 69.8
QL12p039198 Quercus lobata HOM05D001120 ORTHO05D002943 9.2e-19 97.1 63 68.3
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 1.2e-18 96.7 63 68.3
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 1.6e-18 96.3 63 68.3
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 2.7e-18 95.5 63 69.8
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 2.7e-18 95.5 62 69.4
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 2.7e-18 95.5 85 57.6
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 3.5e-18 95.1 65 66.2
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 3.5e-18 95.1 65 66.2
Psat1g105640 Pisum sativum HOM05D001120 ORTHO05D002943 4.5e-18 94.7 80 57.5
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 5.9e-18 94.4 63 66.7
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 5.9e-18 94.4 88 53.4
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 5.9e-18 94.4 63 65.1
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 7.8e-18 94.0 65 66.2
MD07G1015000 Malus domestica HOM05D001120 ORTHO05D002943 7.8e-18 94.0 63 65.1
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 1.0e-17 93.6 63 65.1
CsaV3_3G016470 Cucumis sativus L. HOM05D001120 ORTHO05D002943 1.3e-17 93.2 63 66.7
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 1.3e-17 93.2 63 65.1
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 1.3e-17 93.2 63 66.7
Nn1g01163 Nelumbo nucifera HOM05D001120 ORTHO05D002943 1.7e-17 92.8 63 65.1
Phvul.011G124600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 2.3e-17 92.4 82 52.4
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 2.3e-17 92.4 55 70.9
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 2.3e-17 92.4 69 62.3
vmacro09881 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 2.3e-17 92.4 91 52.7
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 2.9e-17 92.0 63 65.1
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 3.8e-17 91.7 58 70.7
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 3.8e-17 91.7 58 70.7
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 3.8e-17 91.7 58 70.7
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 5.0e-17 91.3 58 69.0
FvH4_7g28431 Fragaria vesca HOM05D001120 ORTHO05D002943 5.0e-17 91.3 63 68.3
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 6.6e-17 90.9 88 48.9
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 6.6e-17 90.9 58 67.2
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 68.3
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 68.3
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 68.3
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 68.3
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 66.7
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.6e-17 90.9 63 66.7
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 6.6e-17 90.9 82 51.2
Mapoly0030s0021 Marchantia polymorpha HOM05D001120 ORTHO05D002943 8.6e-17 90.5 94 54.3
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 8.6e-17 90.5 74 62.2
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 1.1e-16 90.1 58 69.0
BraA10t43035Z Brassica rapa HOM05D001120 ORTHO05D002943 1.1e-16 90.1 58 69.0
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 1.1e-16 90.1 61 65.6
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 1.9e-16 89.4 63 63.5
MD07G1260500 Malus domestica HOM05D001120 ORTHO05D002943 1.9e-16 89.4 63 63.5
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 2.5e-16 89.0 63 60.3
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 2.5e-16 89.0 63 65.1
Gohir.A07G039900 Gossypium hirsutum HOM05D001120 ORTHO05D002943 2.5e-16 89.0 63 63.5
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 2.5e-16 89.0 62 62.9
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 3.3e-16 88.6 62 66.1
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 9.5e-16 87.0 58 65.5
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 9.5e-16 87.0 88 48.9
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 9.5e-16 87.0 55 65.5
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 1.2e-15 86.7 62 61.3
Pp3c23_3440 Physcomitrium patens HOM05D001120 ORTHO05D002943 1.2e-15 86.7 62 64.5
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 1.6e-15 86.3 58 62.1
Glyma.12G117400 Glycine max HOM05D001120 ORTHO05D002943 1.6e-15 86.3 58 62.1
RcHm_v2.0_Chr4g0391111 Rosa chinensis HOM05D001120 ORTHO05D002943 1.6e-15 86.3 57 66.7
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 2.8e-15 85.5 60 65.0
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 2.8e-15 85.5 61 60.7
Medtr6g079410 Medicago truncatula HOM05D001120 ORTHO05D002943 3.6e-15 85.1 57 63.2
PSO832G4332 Papaver somniferum HOM05D001120 ORTHO05D002943 3.6e-15 85.1 58 65.5
CBR_g433 Chara braunii HOM05D001120 ORTHO05D002943 6.1e-15 84.3 78 52.6
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 8.0e-15 84.0 63 63.5
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 1.8e-14 82.8 55 58.2
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 2.3e-14 82.4 63 60.3
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.3e-14 82.4 63 60.3
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.3e-14 82.4 63 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1247 Anthoceros agrestis HOM05D001120 ORTHO05D002943 3.0e-14 82.0 63 60.3
ECA233G0610 Erigeron canadensis HOM05D001120 ORTHO05D002943 5.2e-14 81.3 56 64.3
RcHm_v2.0_Chr5g0031101 Rosa chinensis HOM05D001422 ORTHO05D001321 2.0e-13 79.3 52 65.4
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 2.6e-13 79.0 63 60.3
THA.LOC104825078 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 3.4e-13 78.6 63 57.1
THA.LOC104825185 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 5.8e-13 77.8 63 54.0
arahy.Tifrunner.gnm1.ann1.BDNL9H Arachis hypogaea HOM05D001120 ORTHO05D002943 7.5e-13 77.4 79 53.2
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 7.5e-13 77.4 79 51.9
SMO172G0194 Selaginella moellendorffii HOM05D001120 ORTHO05D002943 1.3e-12 76.6 100 45.0
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 1.7e-12 76.3 67 56.7
RcHm_v2.0_Chr2g0123811 Rosa chinensis HOM05D001120 ORTHO05D002943 1.7e-12 76.3 57 59.6
arahy.Tifrunner.gnm1.ann1.XVWX7G Arachis hypogaea HOM05D001120 ORTHO05D002943 2.2e-12 75.9 79 50.6
PSO210G7235 Papaver somniferum HOM05D001120 ORTHO05D002943 2.9e-12 75.5 86 48.8
arahy.Tifrunner.gnm1.ann1.Q1XR2M Arachis hypogaea HOM05D001120 ORTHO05D002943 4.9e-12 74.7 79 49.4
RcHm_v2.0_Chr1g0375391 Rosa chinensis HOM05D001120 ORTHO05D002943 1.4e-11 73.2 46 69.6
arahy.Tifrunner.gnm1.ann1.ZX35QI Arachis hypogaea HOM05D001120 ORTHO05D002943 1.9e-11 72.8 79 48.1
Eucgr.A02866 Eucalyptus grandis HOM05D001120 ORTHO05D002943 2.4e-11 72.4 62 51.6
PSO478G1088 Papaver somniferum HOM05D001120 ORTHO05D002943 5.4e-11 71.2 59 54.2
THA.LOC104825082 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 7.0e-11 70.9 64 56.2
arahy.Tifrunner.gnm1.ann1.2Y8ZXL Arachis hypogaea HOM05D001120 ORTHO05D002943 1.2e-10 70.1 79 48.1
Gohir.D07G044000 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.6e-10 69.7 42 71.4
HanXRQChr02g0052421 Helianthus annuus HOM05D001120 ORTHO05D002943 4.6e-10 68.2 54 55.6
THA.LOC104825079 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.0e-09 67.0 63 47.6
HanXRQChr04g0116241 Helianthus annuus HOM05D001120 ORTHO05D002943 1.7e-09 66.2 69 49.3
FvH4_7g28430 Fragaria vesca HOM05D001120 ORTHO05D002943 2.3e-09 65.9 50 62.0
FAN06G4681 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.3e-09 65.9 50 62.0
FAN10G3067 Fragaria x ananassa HOM05D001120 ORTHO05D002943 5.0e-09 64.7 48 62.5
Hma1.2p1_0033F.1_g020890 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 1.1e-08 63.5 63 46.0
PRCOL_00000894 Prasinoderma coloniale HOM05D001120 ORTHO05D002943 1.1e-08 63.5 53 50.9
DCAR_032343 Daucus carota HOM05D001120 ORTHO05D002943 1.5e-08 63.2 52 57.7
SalBow2G0050 Salvia bowleyana HOM05D001120 ORTHO05D002943 1.5e-08 63.2 50 62.0
THA.LOC104798865 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.5e-08 63.2 90 42.2
Ca_11072_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 1.9e-08 62.8 58 53.4
DCAR_007088 Daucus carota HOM05D001120 ORTHO05D002943 1.9e-08 62.8 52 57.7
FAN06G2717 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.9e-08 62.8 48 60.4
Aqoxy5G03662 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 2.5e-08 62.4 48 58.3
COL.COLO4_05156 Corchorus olitorius HOM05D001120 ORTHO05D002943 4.3e-08 61.6 77 41.6
unitig_92.g28185 Utricularia gibba HOM05D001120 ORTHO05D002943 4.3e-08 61.6 57 45.6
unitig_92.g28179 Utricularia gibba HOM05D001120 ORTHO05D002943 1.6e-07 59.7 74 40.5
unitig_92.g28224 Utricularia gibba HOM05D001120 ORTHO05D002943 1.6e-07 59.7 74 40.5
Ca_19538_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 2.1e-07 59.3 53 54.7
Cre06.g306650 Chlamydomonas reinhardtii HOM05D001120 ORTHO05D002943 1.1e-06 57.0 48 54.2
Rhsim07G0025300 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.1e-06 57.0 54 50.0
arahy.Tifrunner.gnm1.ann1.E4F5HJ Arachis hypogaea HOM05D001120 ORTHO05D002943 1.4e-06 56.6 81 42.0
Rhsim07G0024900 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.4e-06 56.6 52 51.9
COL.COLO4_30184 Corchorus olitorius HOM05D001120 ORTHO05D002943 1.8e-06 56.2 51 49.0
EL10Ac3g05118 Beta vulgaris HOM05D001120 ORTHO05D002943 3.1e-06 55.5 58 48.3


User provided reference genes

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