Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 1.4e-61 239.6 135 100.0
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 5.6e-50 201.1 127 89.8
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.6e-49 199.5 127 89.0
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.8e-48 196.1 126 85.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.2e-48 194.5 126 84.9
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 5.2e-48 194.5 126 84.9
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 6.8e-48 194.1 126 85.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 8.9e-48 193.7 128 87.5
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.6e-47 192.2 126 84.1
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.6e-47 192.2 126 84.1
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 2.6e-47 192.2 126 84.1
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 7.5e-47 190.7 126 84.1
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 9.8e-47 190.3 126 84.1
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 1.3e-46 189.9 126 83.3
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.3e-46 189.9 127 85.8
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.7e-46 189.5 126 82.5
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 3.7e-46 188.3 127 82.7
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 4.9e-46 188.0 126 82.5
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 6.4e-46 187.6 126 82.5
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 8.3e-46 187.2 126 81.7
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 8.3e-46 187.2 126 81.0
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.1e-45 186.8 126 82.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.4e-45 185.7 127 81.1
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 4.1e-45 184.9 125 82.4
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 5.4e-45 184.5 127 81.1
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 5.4e-45 184.5 127 81.9
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 5.4e-45 184.5 130 80.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 7.1e-45 184.1 125 80.8
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 7.1e-45 184.1 125 80.8
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 7.1e-45 184.1 126 81.0
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 7.1e-45 184.1 126 82.5
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-44 183.3 126 78.6
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.6e-44 183.0 126 80.2
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 2.1e-44 182.6 126 79.4
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.7e-44 182.2 126 79.4
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.7e-44 182.2 130 78.5
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.6e-44 181.4 126 78.6
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 7.8e-44 180.6 125 79.2
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 7.8e-44 180.6 126 77.0
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 7.8e-44 180.6 126 77.0
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.0e-43 180.3 126 78.6
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.7e-43 179.5 129 79.1
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.7e-43 179.5 130 77.7
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.7e-43 179.5 128 79.7
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.0e-43 178.7 127 78.7
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.9e-43 178.3 126 77.0
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 6.6e-43 177.6 128 77.3
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 6.6e-43 177.6 128 78.1
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 6.6e-43 177.6 129 77.5
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.5e-42 176.4 126 76.2
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.5e-42 176.4 128 77.3
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.9e-42 176.0 129 76.7
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.9e-42 176.0 134 73.9
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.9e-42 176.0 126 77.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 3.3e-42 175.3 126 77.8
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.3e-42 175.3 128 76.6
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 3.3e-42 175.3 114 85.1
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 4.3e-42 174.9 128 76.6
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 4.3e-42 174.9 128 76.6
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.3e-42 174.9 127 78.0
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 5.6e-42 174.5 126 78.6
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 7.3e-42 174.1 127 77.2
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 2.1e-41 172.6 128 75.8
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.1e-41 172.6 128 75.0
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 2.1e-41 172.6 160 66.2
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 3.6e-41 171.8 114 83.3
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.7e-41 171.4 120 79.2
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.1e-40 170.2 128 75.0
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.1e-40 170.2 147 68.7
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 3.1e-40 168.7 120 78.3
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 3.1e-40 168.7 126 74.6
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 3.1e-40 168.7 121 77.7
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 3.1e-40 168.7 134 75.4
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 6.8e-40 167.5 126 73.8
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.2e-39 166.8 120 76.7
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.5e-39 166.4 125 73.6
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.5e-39 166.4 114 81.6
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.5e-39 166.4 114 81.6
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 2.0e-39 166.0 126 76.2
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 3.4e-39 165.2 114 79.8
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 5.8e-39 164.5 125 75.2
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 2.2e-38 162.5 114 78.9
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 4.9e-38 161.4 126 73.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 4.9e-38 161.4 114 78.9
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 6.4e-38 161.0 127 74.8
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.1e-37 160.2 115 79.1
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-37 160.2 117 78.6
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 2.4e-37 159.1 126 73.0
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.1e-37 158.3 125 72.8
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 5.4e-37 157.9 127 74.0
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 3.5e-36 155.2 111 81.1
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 3.5e-36 155.2 114 74.6
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.3e-35 153.3 110 78.2
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.3e-35 153.3 126 70.6
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.7e-35 152.9 129 69.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.3e-35 152.5 126 73.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 4.3e-34 148.3 126 72.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 7.3e-34 147.5 126 69.8
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.6e-33 146.4 115 74.8
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.8e-33 145.6 126 67.5
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.6e-33 145.2 129 69.0
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.6e-33 145.2 129 69.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.4e-32 143.3 114 71.9
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.8e-32 142.9 129 67.4
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.4e-32 142.5 150 58.7
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.4e-31 138.7 129 67.4
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.4e-31 138.7 129 67.4
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 3.4e-31 138.7 143 62.2
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 4.4e-31 138.3 110 71.8
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 5.8e-31 137.9 114 71.1
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 5.8e-31 137.9 126 65.9
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 9.9e-31 137.1 128 64.8
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.9e-29 132.9 129 65.9
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.6e-28 129.8 99 71.7
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.9e-27 125.2 95 73.7
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 3.9e-27 125.2 117 66.7
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 3.9e-27 125.2 128 62.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 6.6e-27 124.4 128 61.7
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.4e-24 116.7 130 56.9
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 4.0e-24 115.2 85 74.1
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 5.3e-24 114.8 80 76.2
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 5.3e-24 114.8 83 77.1
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 9.0e-24 114.0 77 79.2
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 9.0e-24 114.0 130 56.9
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 5.8e-23 111.3 80 76.2
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.9e-21 106.3 64 90.6
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 2.1e-20 102.8 132 54.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.0e-19 100.5 66 80.3
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 2.3e-19 99.4 66 81.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 5.6e-18 94.7 267 33.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 1.6e-17 93.2 121 49.6
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 4.8e-17 91.7 66 77.3
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.2e-15 87.0 57 82.5
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 5.8e-15 84.7 60 75.0
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 5.8e-15 84.7 123 46.3
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 1.3e-14 83.6 85 55.3
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 2.9e-14 82.4 63 73.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 3.8e-14 82.0 63 71.4
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.9e-13 79.7 54 77.8
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.9e-13 79.7 52 80.8
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 1.8e-11 73.2 73 64.4
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.0e-07 59.7 48 70.8
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.7e-06 56.6 39 79.5


User provided reference genes

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