Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 2186.0 1100 100.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1872.1 1102 84.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1852.0 1104 85.0
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1849.3 1101 84.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1825.1 1106 82.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1763.8 1109 79.9
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1758.8 1103 80.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1743.0 1105 79.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1725.3 1102 78.1
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1102 77.9
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1717.6 1102 77.9
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1114 77.4
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1102 78.2
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1711.0 1102 78.5
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1699.9 1114 77.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1699.1 1103 77.2
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1697.9 1112 76.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1100 77.2
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1694.9 1116 77.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1692.6 1116 76.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1108 76.4
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1111 76.4
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1112 76.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1686.0 1113 76.2
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1683.3 1111 76.4
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1116 76.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1029 82.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1102 77.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1106 76.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1113 76.3
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1677.1 1109 76.1
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1117 76.2
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1116 74.6
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1128 74.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1111 74.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1101 76.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1663.3 1111 74.9
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1064 76.9
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1116 75.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1094 76.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1129 74.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1102 75.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1168 71.9
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1112 74.8
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1104 75.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1054 77.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1111 74.2
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1109 75.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1108 75.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1097 75.9
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1198 70.6
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1111 74.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1141 72.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1633.6 1107 75.2
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1153 72.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1117 74.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1108 73.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1044 77.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1106 74.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1105 74.4
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1109 73.4
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1113 73.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1107 74.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1615.9 1106 73.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1615.5 1203 69.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1113 73.6
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1094 73.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1104 74.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1086 74.6
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1094 73.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1602.0 1094 73.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1101 73.1
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1116 72.8
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1095 73.5
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1081 74.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1597.4 1088 73.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1112 72.8
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1032 76.1
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1116 72.2
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1089 73.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1590.1 1106 72.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1589.7 1094 73.5
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1588.9 1089 73.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1588.5 1093 73.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1104 72.4
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1104 72.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1101 72.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1093 73.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1581.2 1104 72.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 1126 71.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 1101 72.6
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1576.6 1099 72.8
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1575.8 1103 72.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1095 72.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1137 70.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1099 72.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1570.8 1108 71.6
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1570.1 1105 72.4
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1100 72.8
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1103 72.3
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1564.3 1103 72.0
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1098 72.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1559.7 1105 72.2
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1543.5 1140 69.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1541.2 1054 73.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1532.7 1140 68.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1479.9 1141 67.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1469.9 892 81.8
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1457.2 992 72.7
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1442.9 938 76.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1431.8 1065 70.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1027 67.5
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1406.3 1025 66.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1364.0 980 68.4
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1343.2 1134 63.2
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1341.3 1134 63.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1290.0 825 77.2
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1280.0 1037 62.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1191.4 1090 58.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1167.5 862 69.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1167.1 770 76.6
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1145.6 738 77.6
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1109.7 1076 53.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 1004 54.6
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1082.8 1014 54.5
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1081.2 745 72.9
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.5e-299 1031.9 904 63.2
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 4.5e-299 1031.6 761 69.5
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 5.4e-268 928.3 907 54.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-259 900.2 799 57.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.1e-256 889.8 580 73.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-255 887.1 619 74.6
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 9.3e-244 847.8 1024 43.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.8e-210 737.3 696 54.7
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-209 734.6 443 81.3
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.3e-209 732.6 668 58.8
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.0e-202 709.9 669 57.2
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.2e-181 640.6 427 73.5
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.5e-172 609.4 551 62.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-170 605.1 509 63.3
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.2e-170 602.8 426 70.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.1e-159 568.5 472 63.8
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 3.7e-152 543.5 1029 35.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.1e-148 531.9 370 75.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.4e-143 513.1 416 60.6
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 8.6e-141 505.8 405 65.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.4e-129 467.2 335 68.1
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.1e-127 462.2 309 72.5
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.1e-122 445.7 416 57.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.2e-111 407.1 1014 29.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.6e-108 396.7 955 29.9
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.2e-102 379.0 283 71.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.1e-98 365.9 1017 27.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.5e-95 354.8 227 76.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.7e-91 340.9 931 28.9
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.9e-81 307.0 154 90.9
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.6e-52 211.8 332 35.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.4e-52 211.1 896 22.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-49 202.2 310 42.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-47 196.1 208 49.0
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 4.3e-47 194.5 124 78.2
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.4e-43 180.6 146 62.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 4.1e-42 177.9 220 50.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.0e-42 177.2 150 57.3
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 6.0e-41 174.1 152 65.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.5e-39 166.8 273 38.1
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.9e-35 154.5 461 26.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.4e-34 152.9 149 53.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.2e-34 151.8 134 60.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.3e-31 141.4 162 42.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 5.6e-31 141.0 182 47.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.1e-29 135.2 422 26.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 8.6e-24 117.1 105 53.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-23 116.3 81 66.7
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-21 110.2 288 26.0
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.6e-15 87.8 118 44.9
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-14 86.3 83 55.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.4e-10 72.4 56 58.9
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 5.4e-10 71.2 45 71.1
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 9.3e-10 70.5 88 46.6
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 3.5e-09 68.6 48 64.6
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 4.6e-09 68.2 149 34.9
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-08 65.9 77 48.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.9e-08 65.1 36 83.3


User provided reference genes

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