Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 5.5e-75 284.3 148 100.0
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 4.3e-35 151.8 90 81.1
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 7.5e-32 141.0 90 74.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 3.2e-30 135.6 94 70.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 4.1e-30 135.2 143 58.0
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.5e-27 126.7 94 66.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.9e-27 126.3 106 61.3
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.9e-27 126.3 94 66.0
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 7.3e-27 124.4 91 67.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 9.5e-27 124.0 94 62.8
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.5e-27 124.0 92 64.1
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.1e-26 122.9 94 63.8
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 4.7e-26 121.7 94 64.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.2e-26 121.3 94 62.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 6.2e-26 121.3 94 63.8
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 8.0e-26 120.9 96 65.6
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.4e-25 120.2 94 64.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.4e-25 120.2 94 59.6
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.8e-25 119.8 94 63.8
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.8e-25 119.8 95 65.3
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.8e-25 119.8 94 62.8
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 2.3e-25 119.4 94 62.8
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.3e-25 119.4 94 59.6
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 3.1e-25 119.0 92 62.0
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.0e-25 118.6 94 61.7
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.0e-25 118.6 94 59.6
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 5.2e-25 118.2 94 61.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.2e-25 118.2 94 61.7
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 6.8e-25 117.9 94 62.8
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 6.8e-25 117.9 94 62.8
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 6.8e-25 117.9 92 60.9
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 8.9e-25 117.5 94 59.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 8.9e-25 117.5 94 61.7
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.2e-24 117.1 99 61.6
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.5e-24 116.7 94 61.7
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.5e-24 116.7 94 59.6
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.5e-24 116.7 93 60.2
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.4e-24 115.5 92 59.8
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 3.4e-24 115.5 95 58.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.4e-24 115.2 94 60.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.4e-24 115.2 94 60.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.4e-24 115.2 95 55.8
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 5.8e-24 114.8 111 53.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 5.8e-24 114.8 111 53.2
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 5.8e-24 114.8 111 53.2
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.5e-24 114.4 95 56.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.8e-24 114.0 94 55.3
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.3e-23 113.6 106 55.7
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-23 113.6 94 54.3
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.7e-23 113.2 94 55.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.7e-23 113.2 95 54.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.7e-23 113.2 92 60.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.2e-23 112.8 94 54.3
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.2e-23 112.8 94 55.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.2e-23 112.8 94 55.3
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-23 112.8 94 55.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.2e-23 112.8 94 55.3
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.2e-23 112.8 95 57.9
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.2e-23 112.8 93 60.2
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.2e-23 112.8 106 54.7
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.2e-23 112.8 92 58.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.2e-23 112.8 92 58.7
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.9e-23 112.5 94 54.3
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 2.9e-23 112.5 111 52.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.9e-23 112.5 111 52.3
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.9e-23 112.5 111 51.4
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.9e-23 112.5 94 54.3
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.7e-23 112.1 93 62.4
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 4.9e-23 111.7 92 57.6
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 8.3e-23 110.9 107 53.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 8.3e-23 110.9 89 61.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-22 110.5 94 57.4
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-22 110.5 94 57.4
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.4e-22 109.4 103 54.4
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 2.4e-22 109.4 103 54.4
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-22 109.0 111 51.4
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.1e-22 108.6 93 55.9
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.0e-22 107.8 120 48.3
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 9.2e-22 107.5 94 53.2
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.6e-21 106.7 96 53.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.6e-21 105.1 94 52.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 6.0e-21 104.8 141 45.4
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 7.3e-19 97.8 74 62.2
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 6.2e-18 94.7 93 50.5
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.1e-17 94.0 126 46.8
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 3.1e-17 92.4 163 37.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.2e-16 90.5 94 53.2
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 2.9e-15 85.9 92 53.3
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.1e-14 84.0 103 44.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 7.1e-14 81.3 79 58.2
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 7.1e-14 81.3 92 47.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 7.1e-14 81.3 92 47.8
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.1e-13 79.7 79 50.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.1e-13 79.7 79 50.6
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.1e-13 79.7 92 48.9
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 3.5e-13 79.0 69 56.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.5e-13 79.0 93 48.4
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.0e-12 77.4 73 58.9
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.0e-12 77.4 69 55.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.3e-12 77.0 93 47.3
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.0e-12 75.9 69 53.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.0e-12 75.9 93 45.2
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 3.0e-12 75.9 69 56.5
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.0e-12 75.9 69 55.1
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.0e-12 75.9 69 53.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 3.9e-12 75.5 69 55.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.9e-12 75.5 69 55.1
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.1e-12 75.1 69 53.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.1e-12 75.1 69 53.6
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 5.1e-12 75.1 92 44.6
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 6.6e-12 74.7 90 44.4
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 6.6e-12 74.7 69 52.2
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.6e-12 74.7 77 51.9
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 8.6e-12 74.3 69 52.2
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 8.6e-12 74.3 69 53.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.5e-11 73.6 69 52.2
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.9e-11 73.2 93 46.2
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.9e-11 73.2 75 50.7
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.5e-11 72.8 93 46.2
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-11 72.4 70 52.9
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-11 72.4 70 52.9
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.3e-11 72.4 70 52.9
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 5.6e-11 71.6 80 46.2
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 7.3e-11 71.2 67 53.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 7.3e-11 71.2 67 53.7
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 7.3e-11 71.2 70 52.9
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 7.3e-11 71.2 70 52.9
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 9.5e-11 70.9 70 51.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 9.5e-11 70.9 73 52.1
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.5e-11 70.9 69 53.6
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 9.5e-11 70.9 69 49.3
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.2e-10 70.5 69 52.2
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.2e-10 70.5 70 54.3
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 2.1e-10 69.7 87 48.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.1e-10 69.7 42 83.3
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.6e-10 68.9 74 47.3
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 6.2e-10 68.2 74 47.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.1e-09 67.4 69 53.6
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.4e-09 67.0 69 49.3
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.8e-09 66.6 68 50.0
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.0e-09 65.5 69 47.8
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.0e-09 65.5 69 47.8
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 5.2e-09 65.1 61 57.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 8.9e-09 64.3 69 47.8
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 2.6e-08 62.8 81 45.7
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 3.4e-08 62.4 61 54.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 5.8e-08 61.6 50 56.0
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 9.9e-08 60.8 60 56.7
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 9.9e-08 60.8 151 31.1
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 9.9e-08 60.8 53 58.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-07 60.5 61 57.4
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.7e-07 60.1 63 50.8
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.2e-07 59.7 74 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 3.8e-07 58.9 65 43.1
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.9e-06 56.6 50 56.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.4e-06 56.2 94 38.3
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 3.2e-06 55.8 69 36.2


User provided reference genes

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