Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold311G48240 Striga asiatica HOM05D001240 ORTHO05D002450 2.3e-48 195.3 100 100.0
SGA_v2.0_scaffold52G19205 Striga asiatica HOM05D001240 ORTHO05D003764 1.1e-26 123.2 91 75.8
SGA_v2.0_scaffold153G36935 Striga asiatica HOM05D001240 ORTHO05D002450 3.6e-22 108.2 94 63.8
AUR62004133 Chenopodium quinoa HOM05D001240 ORTHO05D002450 3.1e-21 105.1 93 62.4
MSTRG.17144 Avicennia marina HOM05D001240 ORTHO05D002450 9.0e-21 103.6 94 62.8
Migut.B01559 Erythranthe guttata HOM05D001240 ORTHO05D002450 1.5e-20 102.8 94 60.6
EL10Ac1g00804 Beta vulgaris HOM05D001240 ORTHO05D002450 4.9e-19 97.8 93 57.0
vmacro13473 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 8.4e-19 97.1 93 55.9
Sopen11g008390 Solanum pennellii HOM05D001240 ORTHO05D002450 2.4e-18 95.5 94 57.4
Oeu061501.1 Olea europaea HOM05D001240 ORTHO05D002450 4.2e-18 94.7 94 59.6
Oeu061502.1 Olea europaea HOM05D001240 ORTHO05D002450 4.2e-18 94.7 94 59.6
Dinv02630 Davidia involucrata HOM05D001240 ORTHO05D002450 5.4e-18 94.4 94 55.3
Hund17072 Selenicereus undatus HOM05D001240 ORTHO05D002450 9.3e-18 93.6 93 54.8
ECA234G2180 Erigeron canadensis HOM05D001240 ORTHO05D002450 1.2e-17 93.2 94 57.4
Rhsim07G0033400 Rhododendron simsii HOM05D001240 ORTHO05D002450 1.2e-17 93.2 93 53.8
Duzib138G0437 Durio zibethinus HOM05D001240 ORTHO05D002450 1.6e-17 92.8 94 55.3
Thecc.01G388000 Theobroma cacao HOM05D001240 ORTHO05D002450 3.5e-17 91.7 94 55.3
Actinidia12166 Actinidia chinensis HOM05D001240 ORTHO05D002450 6.0e-17 90.9 94 54.3
Lsat_1_v5_gn_4_43721 Lactuca sativa HOM05D001240 ORTHO05D002450 1.8e-16 89.4 94 54.3
DCAR_015857 Daucus carota HOM05D001240 ORTHO05D002450 3.0e-16 88.6 94 52.1
Sabra02G0110200 Salix brachista HOM05D001240 ORTHO05D002450 3.0e-16 88.6 94 53.2
Cfa011114 Carpinus fangiana HOM05D001240 ORTHO05D002450 3.9e-16 88.2 94 51.1
Ciclev10018789m.g Citrus clementina HOM05D001240 ORTHO05D002450 6.7e-16 87.4 94 53.2
Aqoxy7G00824 Aquilegia oxysepala HOM05D001240 ORTHO05D002450 1.1e-15 86.7 94 54.3
Cc02_g24800 Coffea canephora HOM05D001240 ORTHO05D002450 1.5e-15 86.3 88 53.4
Duzib133G0682 Durio zibethinus HOM05D001240 ORTHO05D002450 1.5e-15 86.3 94 52.1
Nitab4.5_0009626g0010 Nicotiana tabacum HOM05D001240 ORTHO05D002450 1.5e-15 86.3 88 55.7
VMungo1383G0153 Vigna mungo HOM05D001240 ORTHO05D002450 1.5e-15 86.3 94 52.1
Glyma.11G175700 Glycine max HOM05D001240 ORTHO05D002450 1.9e-15 85.9 94 52.1
Gohir.A08G029900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 3.3e-15 85.1 89 52.8
CANSAT21G1530 Cannabis sativa HOM05D001240 ORTHO05D002450 4.3e-15 84.7 94 48.9
CiPaw.13G029600 Carya illinoinensis HOM05D001240 ORTHO05D002450 4.3e-15 84.7 94 48.9
Lalb_Chr03g0040151 Lupinus albus HOM05D001240 ORTHO05D002450 4.3e-15 84.7 94 50.0
Potri.002G141300 Populus trichocarpa HOM05D001240 ORTHO05D002450 4.3e-15 84.7 94 48.9
Sabra14G0041000 Salix brachista HOM05D001240 ORTHO05D002450 4.3e-15 84.7 94 51.1
Glyma.01G074000 Glycine max HOM05D001240 ORTHO05D002450 5.6e-15 84.3 94 52.1
Cpa.g.sc101.40 Carica papaya HOM05D001240 ORTHO05D002450 9.6e-15 83.6 94 51.1
Manes.05G051900 Manihot esculenta HOM05D001240 ORTHO05D002450 9.6e-15 83.6 94 47.9
Gohir.D08G159100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.3e-14 83.2 95 51.6
Lj1g0014311 Lotus japonicus HOM05D001240 ORTHO05D002450 1.3e-14 83.2 94 53.2
Manes.01G271200 Manihot esculenta HOM05D001240 ORTHO05D002450 1.6e-14 82.8 94 47.9
Sc25g0000760 Simmondsia chinensis HOM05D001240 ORTHO05D002450 1.6e-14 82.8 90 51.1
unitig_8.g3840 Utricularia gibba HOM05D001240 ORTHO05D002450 1.6e-14 82.8 94 51.1
arahy.Tifrunner.gnm1.ann1.PNMP4P Arachis hypogaea HOM05D001240 ORTHO05D002450 2.1e-14 82.4 94 48.9
Lalb_Chr19g0126661 Lupinus albus HOM05D001240 ORTHO05D002450 2.1e-14 82.4 94 50.0
Gohir.D08G040700 Gossypium hirsutum HOM05D001240 ORTHO05D002450 3.7e-14 81.6 81 58.0
Gorai.004G039600 Gossypium raimondii HOM05D001240 ORTHO05D002450 3.7e-14 81.6 81 58.0
Gohir.A07G151900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 4.8e-14 81.3 85 54.1
Nitab4.5_0000051g0250 Nicotiana tabacum HOM05D001240 ORTHO05D002450 8.1e-14 80.5 83 55.4
RcHm_v2.0_Chr1g0346311 Rosa chinensis HOM05D001240 ORTHO05D002450 8.1e-14 80.5 92 48.9
COL.COLO4_12451 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.4e-13 79.7 95 50.5
Gorai.007G087200 Gossypium raimondii HOM05D001240 ORTHO05D002450 1.4e-13 79.7 81 56.8
Duzib268G0901 Durio zibethinus HOM05D001240 ORTHO05D002450 2.4e-13 79.0 80 56.2
Peaxi162Scf00018g00311 Petunia axillaris HOM05D001240 ORTHO05D002450 2.4e-13 79.0 83 54.2
HanXRQChr05g0138451 Helianthus annuus HOM05D001240 ORTHO05D002450 3.1e-13 78.6 75 58.7
CiPaw.14G023600 Carya illinoinensis HOM05D001240 ORTHO05D002450 5.3e-13 77.8 81 51.9
PSO017G0984 Papaver somniferum HOM05D001240 ORTHO05D002450 5.3e-13 77.8 94 46.8
PSO170G3933 Papaver somniferum HOM05D001240 ORTHO05D002450 5.3e-13 77.8 94 46.8
THA.LOC104817201 Tarenaya hassleriana HOM05D001240 ORTHO05D002450 5.3e-13 77.8 94 48.9
MD02G1218200 Malus domestica HOM05D001240 ORTHO05D002450 6.9e-13 77.4 94 47.9
PGR004G1996 Punica granatum HOM05D001240 ORTHO05D002450 9.0e-13 77.0 75 50.7
Ah.05g173400 Amaranthus hybridus HOM05D001240 ORTHO05D002450 1.2e-12 76.6 94 47.9
Gohir.A11G077100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.2e-12 76.6 91 51.6
MD07G1098900 Malus domestica HOM05D001240 ORTHO05D002450 1.2e-12 76.6 94 46.8
Medtr7g046250 Medicago truncatula HOM05D001240 ORTHO05D002450 1.2e-12 76.6 94 50.0
TAR375G0817 Trochodendron aralioides HOM05D001240 ORTHO05D002450 1.2e-12 76.6 83 54.2
SalBow5G0872 Salvia bowleyana HOM05D001240 ORTHO05D002450 2.6e-12 75.5 65 69.2
Psat3g180600 Pisum sativum HOM05D001240 ORTHO05D002450 5.8e-12 74.3 94 47.9
arahy.Tifrunner.gnm1.ann1.J7EN8P Arachis hypogaea HOM05D001240 ORTHO05D002450 7.6e-12 73.9 94 46.8
FAN03G0248 Fragaria x ananassa HOM05D001240 ORTHO05D002450 7.6e-12 73.9 84 50.0
SHI13595 Sapria himalayana HOM05D001240 ORTHO05D002450 7.6e-12 73.9 96 46.9
BcaC02g12257 Brassica carinata HOM05D001240 ORTHO05D002450 1.0e-11 73.6 94 44.7
A05p05070 Brassica napus HOM05D001240 ORTHO05D002450 1.0e-11 73.6 94 44.7
C04p05920 Brassica napus HOM05D001240 ORTHO05D002450 1.0e-11 73.6 94 44.7
BolC4t22223H Brassica oleracea HOM05D001240 ORTHO05D002450 1.0e-11 73.6 94 44.7
BraA05t19481Z Brassica rapa HOM05D001240 ORTHO05D002450 1.0e-11 73.6 94 44.7
Prupe.2G122900 Prunus persica HOM05D001240 ORTHO05D002450 1.3e-11 73.2 81 51.9
Gorai.004G165100 Gossypium raimondii HOM05D001240 ORTHO05D002450 1.7e-11 72.8 75 56.0
TPR.G39045 Trifolium pratense HOM05D001240 ORTHO05D002450 2.2e-11 72.4 94 44.7
TWI23G0115 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 2.2e-11 72.4 67 56.7
GSVIVG01018223001 Vitis vinifera HOM05D001240 ORTHO05D002450 2.9e-11 72.0 81 49.4
Gohir.A08G137833 Gossypium hirsutum HOM05D001240 ORTHO05D002450 3.8e-11 71.6 68 58.8
Nn1g00928 Nelumbo nucifera HOM05D001240 ORTHO05D002450 3.8e-11 71.6 80 53.8
Potri.014G055800 Populus trichocarpa HOM05D001240 ORTHO05D002450 6.5e-11 70.9 67 55.2
HPP92_015119 Vanilla planifolia HOM05D001240 ORTHO05D002450 6.5e-11 70.9 92 42.4
CARHR140190 Cardamine hirsuta HOM05D001240 ORTHO05D002450 8.4e-11 70.5 94 43.6
Os04g0550400 Oryza sativa ssp. japonica HOM05D001240 ORTHO05D002450 1.4e-10 69.7 94 42.6
SEGI_15435 Sequoiadendron giganteum HOM05D001240 ORTHO05D002450 3.2e-10 68.6 93 46.2
TWI59G0329 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 3.2e-10 68.6 67 53.7
AL4G44060 Arabidopsis lyrata HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 41.5
AT2G44950 Arabidopsis thaliana HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 41.5
BcaC02g07125 Brassica carinata HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 43.6
A04p33570 Brassica napus HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 43.6
BolC4t28639H Brassica oleracea HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 43.6
BraA04t18819Z Brassica rapa HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 43.6
Sp4g27030 Schrenkiella parvula HOM05D001240 ORTHO05D002450 4.2e-10 68.2 94 41.5
AagrBONN_evm.TU.Sc2ySwM_228.3485 Anthoceros agrestis HOM05D001240 ORTHO05D002450 5.5e-10 67.8 95 41.1
BcaB06g29409 Brassica carinata HOM05D001240 ORTHO05D002450 5.5e-10 67.8 94 43.6
FAN10G1201 Fragaria x ananassa HOM05D001240 ORTHO05D002450 5.5e-10 67.8 74 50.0
FAN10G2665 Fragaria x ananassa HOM05D001240 ORTHO05D002450 5.5e-10 67.8 74 50.0
Phvul.008G141100 Phaseolus vulgaris HOM05D001240 ORTHO05D002450 5.5e-10 67.8 74 51.4
FvH4_7g09510 Fragaria vesca HOM05D001240 ORTHO05D002450 7.1e-10 67.4 74 50.0
Aa31LG1G26550 Aethionema arabicum HOM05D001240 ORTHO05D002450 1.2e-09 66.6 92 44.6
Carub.0004s2756 Capsella rubella HOM05D001240 ORTHO05D002450 1.2e-09 66.6 94 40.4
Thhalv10001306m.g Eutrema salsugineum HOM05D001240 ORTHO05D002450 2.1e-09 65.9 94 42.6
FAN06G2617 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.1e-09 65.9 67 50.7
FAN06G3317 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.1e-09 65.9 67 50.7
Sed0002705 Sechium edule HOM05D001240 ORTHO05D002450 3.5e-09 65.1 94 40.4
Eucgr.E02757 Eucalyptus grandis HOM05D001240 ORTHO05D002450 4.6e-09 64.7 79 46.8
MBI04_g09531_MAGBIO Magnolia biondii HOM05D001240 ORTHO05D002450 3.0e-08 62.0 58 60.3
Mapoly0035s0133 Marchantia polymorpha HOM05D001240 ORTHO05D002450 3.0e-08 62.0 94 39.4
Pp3c10_17220 Physcomitrium patens HOM05D001240 ORTHO05D002450 3.9e-08 61.6 95 40.0
Pp3c10_17225 Physcomitrium patens HOM05D001240 ORTHO05D002450 3.9e-08 61.6 95 40.0
Pp3c12_18130 Physcomitrium patens HOM05D001240 ORTHO05D002450 5.1e-08 61.2 94 38.3
Zm00001eb273100 Zea mays HOM05D001240 ORTHO05D002450 5.1e-08 61.2 94 39.4
QL04p034731 Quercus lobata HOM05D001240 ORTHO05D002450 6.7e-08 60.8 55 60.0
BcaB02g08961 Brassica carinata HOM05D001240 ORTHO05D002450 1.1e-07 60.1 79 46.8
Haze_02752 Corylus avellana HOM05D001240 ORTHO05D002450 1.1e-07 60.1 59 52.5
Zm00001eb226640 Zea mays HOM05D001240 ORTHO05D002450 1.1e-07 60.1 94 39.4
CDE09G1357 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 3.3e-07 58.5 94 37.2
PGR044G1558 Punica granatum HOM05D001240 ORTHO05D002450 3.3e-07 58.5 90 38.9
SMO174G0047 Selaginella moellendorffii HOM05D001240 ORTHO05D002450 3.3e-07 58.5 94 37.2
CBR_g70 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-07 58.2 95 40.0
Haze_22986 Corylus avellana HOM05D001240 ORTHO05D002450 1.3e-06 56.6 92 37.0
FAN01G0771 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.3e-06 56.6 53 56.6
Pp3c16_2030 Physcomitrium patens HOM05D001240 ORTHO05D002450 1.3e-06 56.6 94 37.2
Cfa009612 Carpinus fangiana HOM05D001240 ORTHO05D002450 1.6e-06 56.2 92 37.0
Potri.001G008800 Populus trichocarpa HOM05D001240 ORTHO05D002450 2.1e-06 55.8 91 38.5
Glyma.02G267300 Glycine max HOM05D001240 ORTHO05D002450 2.8e-06 55.5 91 37.4
CiPaw.13G173000 Carya illinoinensis HOM05D001240 ORTHO05D002450 3.7e-06 55.1 92 37.0
FvH4_3g44811 Fragaria vesca HOM05D001240 ORTHO05D002450 4.8e-06 54.7 91 34.1
FAN11G1041 Fragaria x ananassa HOM05D001240 ORTHO05D002450 4.8e-06 54.7 91 34.1
FAN16G0771 Fragaria x ananassa HOM05D001240 ORTHO05D002450 4.8e-06 54.7 91 34.1
FAN21G1555 Fragaria x ananassa HOM05D001240 ORTHO05D002450 4.8e-06 54.7 91 34.1
QL01p007971 Quercus lobata HOM05D001240 ORTHO05D002450 4.8e-06 54.7 92 37.0
Glyma.14G050200 Glycine max HOM05D001240 ORTHO05D002450 6.2e-06 54.3 91 37.4
Hma1.2p1_0972F.1_g242820 Hydrangea macrophylla HOM05D001240 ORTHO05D002450 6.2e-06 54.3 91 35.2
Lalb_Chr17g0347201 Lupinus albus HOM05D001240 ORTHO05D002450 6.2e-06 54.3 92 37.0
ATR0057G002 Amborella trichopoda HOM05D001240 ORTHO05D002450 8.2e-06 53.9 55 49.1
ClCG05G000330 Citrullus lanatus HOM05D001240 ORTHO05D003764 8.2e-06 53.9 67 41.8
Cc01_g01540 Coffea canephora HOM05D001240 ORTHO05D002450 8.2e-06 53.9 92 34.8
MELO3C005971.2 Cucumis melo HOM05D001240 ORTHO05D002450 8.2e-06 53.9 67 41.8
FAN25G3163 Fragaria x ananassa HOM05D001240 ORTHO05D002450 8.2e-06 53.9 91 34.1
Sed0005356 Sechium edule HOM05D001240 ORTHO05D002450 8.2e-06 53.9 67 41.8


User provided reference genes

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