Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 2.9e-84 315.1 149 100.0
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 4.1e-70 268.1 150 86.0
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.5e-67 258.8 150 82.7
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 4.2e-67 258.1 149 82.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 2.1e-66 255.8 149 81.2
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 4.7e-66 254.6 149 80.5
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.8e-65 252.7 149 79.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.8e-65 252.7 157 79.6
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 3.0e-65 251.9 149 78.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 4.0e-65 251.5 150 79.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 4.0e-65 251.5 150 79.3
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.8e-65 250.8 149 79.2
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 8.9e-65 250.4 149 79.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.7e-63 246.1 147 78.9
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.7e-63 246.1 149 79.2
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.2e-63 245.7 152 79.6
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 6.3e-63 244.2 149 77.9
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.1e-62 243.4 151 75.5
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.1e-62 243.4 147 81.6
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 5.4e-62 241.1 151 77.5
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.6e-61 239.6 140 82.9
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.5e-61 238.0 140 82.1
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 5.9e-61 237.7 139 84.2
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.0e-60 236.9 148 79.7
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.3e-60 236.5 152 77.0
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.3e-60 236.5 135 85.2
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.3e-60 236.5 135 85.2
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.7e-60 236.1 149 76.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.7e-60 236.1 149 75.8
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.9e-60 235.3 149 75.8
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 2.9e-60 235.3 139 81.3
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 3.8e-60 235.0 143 77.6
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 5.0e-60 234.6 139 82.0
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.0e-60 234.6 137 83.2
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 6.6e-60 234.2 139 81.3
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.1e-59 233.4 149 76.5
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 77.0
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.5e-59 233.0 118 90.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.9e-59 232.6 138 81.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.9e-59 232.6 128 83.6
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 1.9e-59 232.6 153 73.9
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.5e-59 232.3 150 74.0
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.3e-59 231.9 150 73.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.3e-59 231.9 130 84.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 4.3e-59 231.5 122 86.9
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 4.3e-59 231.5 146 76.0
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 4.3e-59 231.5 139 79.1
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.6e-59 231.1 135 83.7
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 7.3e-59 230.7 129 85.3
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 7.3e-59 230.7 135 80.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 9.5e-59 230.3 122 86.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 9.5e-59 230.3 135 80.0
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 9.5e-59 230.3 144 77.1
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.2e-58 229.9 140 78.6
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.6e-58 229.6 143 75.5
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.6e-58 229.6 146 74.7
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 140 79.3
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.1e-58 229.2 121 87.6
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 4.7e-58 228.0 122 86.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.7e-58 228.0 122 86.1
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.7e-58 228.0 168 68.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.7e-58 228.0 159 71.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 6.1e-58 227.6 122 85.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.1e-58 227.6 148 74.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 8.0e-58 227.3 126 83.3
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 8.0e-58 227.3 126 83.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 8.0e-58 227.3 126 83.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 8.0e-58 227.3 127 81.9
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 8.0e-58 227.3 141 77.3
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 8.0e-58 227.3 145 74.5
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.0e-57 226.9 126 82.5
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.0e-57 226.9 139 75.5
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.0e-57 226.9 127 83.5
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-57 226.5 145 73.1
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.4e-57 226.5 145 73.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 154 70.8
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 2.3e-57 225.7 134 79.9
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 3.0e-57 225.3 138 76.8
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 4.0e-57 224.9 123 83.7
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 4.0e-57 224.9 147 74.8
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 5.2e-57 224.6 146 74.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 8.9e-57 223.8 129 79.1
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-56 223.4 126 81.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.0e-56 222.6 123 81.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.0e-56 222.6 140 78.6
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 3.4e-56 221.9 134 78.4
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 7.5e-56 220.7 139 72.7
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.1e-54 216.9 123 78.9
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.8e-54 216.1 141 73.0
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.8e-54 216.1 131 75.6
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 4.1e-54 214.9 124 81.5
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 4.1e-54 214.9 128 76.6
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 7.0e-54 214.2 172 62.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 7.0e-54 214.2 172 62.2
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 7.0e-54 214.2 125 81.6
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-53 213.4 130 78.5
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-53 213.4 130 78.5
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.6e-53 213.0 130 78.5
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 3.5e-53 211.8 112 83.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 4.6e-53 211.5 142 69.0
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 6.0e-53 211.1 138 74.6
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 6.0e-53 211.1 109 85.3
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.7e-52 209.5 116 81.0
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 5.0e-52 208.0 132 75.0
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.5e-51 206.5 140 70.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 4.3e-51 204.9 117 76.9
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 9.5e-51 203.8 158 63.9
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.2e-50 203.4 110 80.0
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.1e-50 202.6 104 85.6
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.2e-50 201.1 104 84.6
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.8e-49 199.5 174 61.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 5.2e-49 198.0 143 69.9
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.7e-47 193.0 129 68.2
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.7e-47 193.0 105 83.8
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.9e-47 192.2 127 68.5
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 3.7e-47 191.8 120 70.8
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-46 189.9 155 65.8
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.5e-45 185.3 159 64.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.0e-44 183.7 154 63.0
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.2e-42 176.8 146 62.3
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 6.2e-42 174.5 91 82.4
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.2e-40 170.2 93 84.9
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 6.4e-39 164.5 87 86.2
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.1e-38 161.8 108 72.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 6.0e-37 157.9 110 70.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 8.6e-36 154.1 78 83.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-35 153.3 114 68.4
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.1e-33 147.1 118 63.6
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.2e-31 139.4 78 84.6
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.1e-30 134.4 104 63.5
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.3e-27 125.6 128 52.3
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.1e-26 122.9 73 71.2
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.2e-24 117.1 311 29.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.8e-24 114.8 68 80.9
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 9.6e-19 97.4 71 60.6
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.1e-17 94.0 52 82.7
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.3e-15 87.0 78 66.7
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-13 80.5 52 67.3
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 5.6e-11 71.6 45 75.6
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.3e-10 70.5 42 73.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.7e-10 68.9 40 70.0
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.7e-10 68.9 37 89.2
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.8e-09 66.6 49 65.3
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-06 56.2 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 3.2e-06 55.8 42 66.7


User provided reference genes

Program Settings