Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold30G12386 Striga asiatica HOM05D021674 ORTHO05D402565 3.9e-75 284.6 138 100.0
SGA_v2.0_scaffold88G27193 Striga asiatica HOM05D021674 ORTHO05D400168 1.8e-51 206.1 130 81.5
SGA_v2.0_scaffold42G15991 Striga asiatica HOM05D021674 ORTHO05D404867 2.5e-29 132.5 157 51.6
SGA_v2.0_scaffold63G21765 Striga asiatica HOM05D021674 ORTHO05D406589 2.5e-29 132.5 157 51.6
SGA_v2.0_scaffold8G04643 Striga asiatica HOM05D021674 ORTHO05D399068 8.6e-22 107.5 55 92.7
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 3.9e-14 82.0 62 71.0
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 2.6e-10 69.3 68 51.5
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 5.8e-10 68.2 59 57.6
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 7.5e-10 67.8 62 54.8
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 9.8e-10 67.4 64 57.8
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 1.3e-09 67.0 60 55.0
FAN20G2235 Fragaria x ananassa HOM05D000032 ORTHO05D006669 1.3e-09 67.0 60 55.0
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 1.3e-09 67.0 60 55.0
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 1.3e-09 67.0 62 56.5
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 2.2e-09 66.2 62 53.2
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 2.2e-09 66.2 68 51.5
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 2.2e-09 66.2 62 53.2
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 2.9e-09 65.9 62 54.8
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 2.9e-09 65.9 60 56.7
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 2.9e-09 65.9 62 54.8
Sed0016675 Sechium edule HOM05D000032 ORTHO05D006669 2.9e-09 65.9 59 55.9
unitig_32.g11227 Utricularia gibba HOM05D000032 ORTHO05D006669 3.7e-09 65.5 60 58.3
vmacro07575 Vaccinium macrocarpon HOM05D000032 ORTHO05D006669 3.7e-09 65.5 58 56.9
FAN15G3432 Fragaria x ananassa HOM05D000032 ORTHO05D006669 4.9e-09 65.1 60 53.3
Aa31LG2G12780 Aethionema arabicum HOM05D000032 ORTHO05D006669 6.4e-09 64.7 63 57.1
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 6.4e-09 64.7 59 54.2
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 8.3e-09 64.3 76 46.1
Rhsim06G0019900 Rhododendron simsii HOM05D000032 ORTHO05D006669 8.3e-09 64.3 58 55.2
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 1.1e-08 63.9 62 54.8
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 1.1e-08 63.9 62 54.8
ECA240G2120 Erigeron canadensis HOM05D000032 ORTHO05D006669 1.4e-08 63.5 79 46.8
THA.LOC104815496 Tarenaya hassleriana HOM05D000032 ORTHO05D006669 1.4e-08 63.5 63 55.6
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.9e-08 63.2 62 54.8
Hma1.2p1_0274F.1_g110370 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.9e-08 63.2 62 54.8
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 2.4e-08 62.8 62 53.2
Solyc04g081580.4 Solanum lycopersicum HOM05D000032 ORTHO05D006669 2.4e-08 62.8 64 57.8
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 2.4e-08 62.8 64 57.8
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 5.4e-08 61.6 60 53.3
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 5.4e-08 61.6 62 51.6
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 7.1e-08 61.2 62 51.6
Cpa.g.sc29.167 Carica papaya HOM05D000032 ORTHO05D006669 7.1e-08 61.2 62 53.2
ECA238G1643 Erigeron canadensis HOM05D000032 ORTHO05D006669 7.1e-08 61.2 64 50.0
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 7.1e-08 61.2 62 51.6
Hund01599 Selenicereus undatus HOM05D000032 ORTHO05D006669 7.1e-08 61.2 62 50.0
AUR62040549 Chenopodium quinoa HOM05D000032 ORTHO05D006669 9.2e-08 60.8 60 51.7
AUR62041487 Chenopodium quinoa HOM05D000032 ORTHO05D006669 9.2e-08 60.8 60 53.3
HanXRQChr16g0529991 Helianthus annuus HOM05D000032 ORTHO05D006669 9.2e-08 60.8 63 50.8
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 1.2e-07 60.5 59 54.2
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 2.1e-07 59.7 62 50.0
Ah.00g000290 Amaranthus hybridus HOM05D000032 ORTHO05D006669 2.1e-07 59.7 59 52.5
MSTRG.25259 Avicennia marina HOM05D000032 ORTHO05D006669 2.1e-07 59.7 48 66.7
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 2.1e-07 59.7 60 55.0
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 2.1e-07 59.7 62 51.6
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 2.7e-07 59.3 66 50.0
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 2.7e-07 59.3 60 51.7
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 3.5e-07 58.9 47 66.0
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 4.6e-07 58.5 62 54.8
Sc15g0004880 Simmondsia chinensis HOM05D000032 ORTHO05D006669 4.6e-07 58.5 62 50.0
BcaC07g38004 Brassica carinata HOM05D000032 ORTHO05D006669 6.0e-07 58.2 69 47.8
A08p12610 Brassica napus HOM05D000032 ORTHO05D006669 6.0e-07 58.2 69 47.8
BolC8t48384H Brassica oleracea HOM05D000032 ORTHO05D006669 6.0e-07 58.2 69 47.8
BraA08t33251Z Brassica rapa HOM05D000032 ORTHO05D006669 6.0e-07 58.2 69 47.8
Prupe.1G363600 Prunus persica HOM05D000032 ORTHO05D006669 6.0e-07 58.2 60 48.3
HanXRQChr13g0412281 Helianthus annuus HOM05D000032 ORTHO05D006669 1.3e-06 57.0 64 48.4
MD01G1061100 Malus domestica HOM05D000032 ORTHO05D006669 1.3e-06 57.0 71 47.9
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 1.7e-06 56.6 60 50.0
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 3.0e-06 55.8 57 50.9
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 3.0e-06 55.8 62 51.6
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 3.0e-06 55.8 60 48.3
CARHR223130 Cardamine hirsuta HOM05D000032 ORTHO05D006669 3.9e-06 55.5 61 52.5
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 3.9e-06 55.5 44 65.9
Thhalv10024452m.g Eutrema salsugineum HOM05D000032 ORTHO05D006669 3.9e-06 55.5 63 50.8
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 5.1e-06 55.1 57 50.9
Zm00001eb318210 Zea mays HOM05D000032 ORTHO05D006669 5.1e-06 55.1 59 54.2
BraA01t01995Z Brassica rapa HOM05D000032 ORTHO05D006669 6.6e-06 54.7 66 45.5
DCAR_023755 Daucus carota HOM05D000032 ORTHO05D006669 6.6e-06 54.7 64 48.4
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 6.6e-06 54.7 43 60.5
Aqoxy7G02510 Aquilegia oxysepala HOM05D000032 ORTHO05D006669 8.6e-06 54.3 63 47.6
MD15G1442700 Malus domestica HOM05D000032 ORTHO05D006669 8.6e-06 54.3 62 46.8
Sp7g15250 Schrenkiella parvula HOM05D000032 ORTHO05D006669 8.6e-06 54.3 92 38.0
TAR628G0705 Trochodendron aralioides HOM05D000032 ORTHO05D006669 8.6e-06 54.3 68 47.1


User provided reference genes

Program Settings