Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 1.7e-249 865.5 427 100.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 9.9e-101 371.3 222 87.4
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 2.2e-76 290.4 208 75.0
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 2.1e-74 283.9 207 72.0
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 1.7e-68 264.2 201 70.6
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 3.5e-66 256.5 206 68.4
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 2.1e-63 247.3 154 78.6
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 3.1e-62 243.4 153 80.4
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 3.1e-62 243.4 153 80.4
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 5.3e-62 242.7 153 79.1
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 1.2e-61 241.5 153 79.1
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.2e-61 241.5 153 79.7
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.0e-61 240.7 164 73.8
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 5.8e-61 239.2 178 68.5
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 7.6e-61 238.8 161 73.9
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 7.6e-61 238.8 156 76.9
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 1.0e-60 238.4 158 77.2
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.3e-60 238.0 175 67.4
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 1.3e-60 238.0 165 71.5
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 1.7e-60 237.7 195 65.1
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 2.2e-60 237.3 186 68.3
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 2.9e-60 236.9 173 69.4
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 3.8e-60 236.5 152 77.6
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 4.9e-60 236.1 164 75.0
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 4.9e-60 236.1 156 75.6
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 6.5e-60 235.7 153 76.5
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 8.4e-60 235.3 184 65.2
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 8.4e-60 235.3 161 75.2
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 1.1e-59 235.0 160 73.1
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.4e-59 234.6 156 74.4
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 1.4e-59 234.6 153 75.8
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.4e-59 234.6 160 73.8
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.4e-59 234.6 186 66.7
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 1.4e-59 234.6 186 66.7
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.4e-59 234.6 183 67.2
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 2.5e-59 233.8 153 75.8
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 2.5e-59 233.8 160 73.1
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 2.5e-59 233.8 178 66.9
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 3.2e-59 233.4 155 74.8
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 4.2e-59 233.0 153 75.2
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 5.5e-59 232.6 164 72.6
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 5.5e-59 232.6 153 74.5
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 7.1e-59 232.3 161 70.8
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 9.3e-59 231.9 155 76.1
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 1.2e-58 231.5 160 71.2
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 1.2e-58 231.5 153 74.5
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.2e-58 231.5 155 74.2
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 1.2e-58 231.5 162 71.6
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 1.2e-58 231.5 195 63.6
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 2.1e-58 230.7 207 60.9
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 2.1e-58 230.7 207 60.9
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 2.7e-58 230.3 160 71.2
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 3.5e-58 229.9 167 70.7
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 7.9e-58 228.8 192 62.0
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 7.9e-58 228.8 163 69.3
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 7.9e-58 228.8 159 72.3
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.3e-57 228.0 209 59.3
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.3e-57 228.0 209 59.3
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 1.3e-57 228.0 148 77.0
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 3.9e-57 226.5 152 75.0
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 3.9e-57 226.5 187 64.2
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 5.1e-57 226.1 148 75.7
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 8.7e-57 225.3 148 75.0
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 8.7e-57 225.3 162 71.6
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 1.5e-56 224.6 164 69.5
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 1.9e-56 224.2 158 73.4
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 4.3e-56 223.0 153 73.2
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 7.4e-56 222.2 181 66.3
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 7.4e-56 222.2 152 73.0
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 8.2e-55 218.8 149 73.2
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.8e-54 217.6 156 70.5
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 6.9e-54 215.7 152 69.1
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 1.5e-53 214.5 148 72.3
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 2.6e-53 213.8 164 67.7
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 4.5e-53 213.0 138 76.8
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 5.9e-53 212.6 152 69.1
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 8.5e-52 208.8 160 67.5
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 1.9e-51 207.6 160 66.2
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 4.2e-51 206.5 159 69.2
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.2e-50 204.9 157 69.4
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.2e-50 204.9 157 69.4
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 6.1e-50 202.6 176 61.4
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 6.7e-49 199.1 232 51.7
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 8.8e-49 198.7 163 63.2
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.7e-47 194.5 161 61.5
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 2.8e-47 193.7 150 63.3
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 1.4e-46 191.4 138 66.7
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 4.1e-46 189.9 132 71.2
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 4.1e-46 189.9 131 72.5
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.5e-45 188.0 149 67.1
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.5e-45 188.0 283 43.1
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 1.0e-44 185.3 161 59.0
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 1.7e-44 184.5 166 64.5
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 2.2e-44 184.1 124 72.6
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 1.5e-37 161.4 187 54.5
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 4.5e-37 159.8 148 58.1
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 8.5e-36 155.6 116 64.7
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 5.5e-35 152.9 195 48.7
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.6e-34 151.4 142 57.0
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 8.0e-34 149.1 102 71.6
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 3.0e-33 147.1 115 67.0
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 3.7e-31 140.2 114 62.3
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 8.2e-31 139.0 149 49.7
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 1.8e-30 137.9 162 50.6
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 1.2e-29 135.2 163 47.9
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 6.5e-28 129.4 89 70.8
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 4.2e-27 126.7 76 77.6
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 6.8e-25 119.4 147 42.2
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 1.5e-24 118.2 149 47.0
SGA_v2.0_scaffold440G51651 Striga asiatica HOM05D007006 ORTHO05D008925 2.6e-24 117.5 68 92.6
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 9.1e-22 109.0 79 65.8
SGA_v2.0_scaffold23G10182 Striga asiatica HOM05D010565 ORTHO05D011213 1.5e-19 101.7 171 33.9
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-18 97.4 75 62.7
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 4.4e-16 90.1 203 30.0
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 9.8e-16 89.0 79 60.8
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 1.2e-10 72.0 121 31.4
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 4.7e-10 70.1 41 82.9
SGA_v2.0_scaffold191G40503 Striga asiatica HOM05D000003 ORTHO05D000004 4.7e-10 70.1 208 28.8
SGA_v2.0_scaffold17G08062 Striga asiatica HOM05D000003 ORTHO05D000006 6.1e-10 69.7 159 28.3
SGA_v2.0_scaffold14G07070 Striga asiatica HOM05D000003 ORTHO05D000004 1.2e-08 65.5 46 56.5
SGA_v2.0_scaffold122G33296 Striga asiatica HOM05D000003 ORTHO05D000004 1.5e-08 65.1 46 50.0
SGA_v2.0_scaffold140G35468 Striga asiatica HOM05D023911 ORTHO05D011213 3.4e-08 63.9 52 48.1
SGA_v2.0_scaffold17G08173 Striga asiatica HOM05D000003 ORTHO05D000004 4.4e-08 63.5 42 54.8
SGA_v2.0_scaffold10G05079 Striga asiatica HOM05D000003 ORTHO05D000004 9.8e-08 62.4 47 44.7
SGA_v2.0_scaffold202G41432 Striga asiatica HOM05D010565 ORTHO05D011213 2.2e-07 61.2 84 40.5
SGA_v2.0_scaffold191G40465 Striga asiatica HOM05D010565 ORTHO05D011213 2.9e-07 60.8 74 36.5
SGA_v2.0_scaffold19G08782 Striga asiatica HOM05D010565 ORTHO05D011213 2.9e-07 60.8 84 40.5
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 6.3e-07 59.7 46 43.5
SGA_v2.0_scaffold36G14413 Striga asiatica HOM05D000003 ORTHO05D011213 6.3e-07 59.7 44 43.2
SGA_v2.0_scaffold302G47834 Striga asiatica HOM05D010565 ORTHO05D011213 8.3e-07 59.3 43 51.2
SGA_v2.0_scaffold424G51472 Striga asiatica HOM05D000003 ORTHO05D011213 8.3e-07 59.3 42 42.9
SGA_v2.0_scaffold170G38754 Striga asiatica HOM05D010565 ORTHO05D011213 1.1e-06 58.9 44 54.5
SGA_v2.0_scaffold1G00691 Striga asiatica HOM05D010565 ORTHO05D011213 1.1e-06 58.9 44 54.5
SGA_v2.0_scaffold380G50369 Striga asiatica HOM05D010565 ORTHO05D011213 1.1e-06 58.9 46 54.3
SGA_v2.0_scaffold46G17370 Striga asiatica HOM05D023911 ORTHO05D011213 1.8e-06 58.2 142 26.1
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 3.2e-06 57.4 40 50.0
SGA_v2.0_scaffold78G25376 Striga asiatica HOM05D010565 ORTHO05D405841 7.0e-06 56.2 47 42.6
SGA_v2.0_scaffold26G11238 Striga asiatica HOM05D008147 ORTHO05D010215 9.2e-06 55.8 47 46.8
SGA_v2.0_scaffold335G49110 Striga asiatica HOM05D001364 ORTHO05D001316 9.2e-06 55.8 60 38.3


User provided reference genes

Program Settings