Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 0.0e+00 1368.2 709 100.0
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 1.7e-89 334.7 738 34.6
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 1.8e-43 181.8 594 27.6
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 3.8e-41 174.1 688 26.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.9e-36 157.1 674 25.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.7e-31 140.6 680 24.9
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 9.8e-29 132.9 702 24.5
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.2e-27 127.9 697 24.8
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 5.2e-22 110.5 302 30.8
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 3.7e-20 104.4 323 27.9
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.8e-18 96.7 177 33.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.3e-17 95.9 105 42.9
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.3e-17 95.1 136 39.0
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 8.6e-17 93.2 115 40.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 8.6e-17 93.2 104 41.3
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 8.6e-17 93.2 246 31.7
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 1.5e-16 92.4 454 26.7
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.9e-16 92.0 100 40.0
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 2.5e-16 91.7 355 27.9
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.3e-16 91.3 149 35.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 4.3e-16 90.9 105 41.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 4.3e-16 90.9 105 41.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 4.3e-16 90.9 100 41.0
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 7.3e-16 90.1 229 28.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 7.3e-16 90.1 112 38.4
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 9.5e-16 89.7 130 36.9
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.8e-15 88.2 126 35.7
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.6e-15 87.8 126 35.7
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 6.2e-15 87.0 100 42.0
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 6.2e-15 87.0 126 37.3
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 8.1e-15 86.7 101 39.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 1.4e-14 85.9 111 39.6
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.8e-14 85.5 117 39.3
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.3e-14 85.1 103 38.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.8e-14 83.6 148 32.4
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 8.9e-14 83.2 243 28.8
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.2e-13 82.8 124 35.5
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.5e-13 82.4 135 34.1
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.4e-13 81.3 131 35.1
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.4e-13 81.3 120 37.5
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.4e-13 81.3 98 40.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 9.8e-13 79.7 98 39.8
PGSC0003DMG400020234 Solanum tuberosum HOM05D007742 ORTHO05D004072 9.8e-13 79.7 166 35.5
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.2e-12 78.6 96 39.6
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 2.2e-12 78.6 128 34.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 2.9e-12 78.2 131 35.9
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.9e-12 77.4 379 23.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 6.4e-12 77.0 182 29.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 8.3e-12 76.6 126 37.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.1e-11 76.3 248 26.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.1e-11 76.3 681 21.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.4e-11 75.9 118 33.9
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 1.9e-11 75.5 124 35.5
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 2.4e-11 75.1 125 36.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.2e-11 74.7 108 38.0
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 1.2e-10 72.8 98 39.8
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.5e-10 71.2 200 27.0
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 4.6e-10 70.9 110 35.5
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.6e-10 70.9 137 32.8
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 7.8e-10 70.1 84 40.5
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.3e-09 69.3 109 33.9
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 2.3e-09 68.6 197 28.9
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 3.0e-09 68.2 109 31.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.9e-09 67.8 109 34.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 5.1e-09 67.4 129 34.9
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 5.1e-09 67.4 129 34.9
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 5.1e-09 67.4 121 33.1
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 8.6e-09 66.6 106 34.9
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 1.1e-08 66.2 116 33.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.1e-08 66.2 86 39.5
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.5e-08 65.9 109 32.1
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.5e-08 65.9 131 30.5
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.9e-08 65.5 113 33.6
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 1.9e-08 65.5 177 28.8
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.3e-08 64.7 118 33.9
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 4.3e-08 64.3 109 35.8
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.3e-08 64.3 303 24.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 5.6e-08 63.9 122 36.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 5.6e-08 63.9 107 34.6
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 7.3e-08 63.5 119 35.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.2e-07 62.8 142 33.1
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.6e-07 62.4 107 33.6
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 2.1e-07 62.0 107 33.6
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.1e-07 62.0 138 30.4
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.1e-07 62.0 150 30.0
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 4.7e-07 60.8 127 30.7
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 6.2e-07 60.5 63 44.4
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 6.2e-07 60.5 48 50.0
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 8.1e-07 60.1 97 34.0
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 8.1e-07 60.1 107 29.9
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.1e-06 58.2 91 35.2


User provided reference genes

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