Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold304G47897 Striga asiatica HOM05D003753 ORTHO05D404371 1.1e-74 283.1 138 100.0
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 1.5e-18 96.7 102 51.0
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 5.8e-18 94.7 107 47.7
SGA_v2.0_scaffold119G32713 Striga asiatica HOM05D003753 ORTHO05D005081 4.9e-17 91.7 85 56.5
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 6.4e-17 91.3 103 49.5
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 8.3e-17 90.9 103 48.5
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 5.4e-16 88.2 104 51.0
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 5.4e-16 88.2 106 46.2
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 5.4e-16 88.2 106 46.2
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 7.0e-16 87.8 106 46.2
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 1.2e-15 87.0 104 51.0
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 1.2e-15 87.0 103 48.5
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 3.5e-15 85.5 106 44.3
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 4.6e-15 85.1 104 47.1
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 1.0e-14 84.0 103 46.6
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.7e-14 83.2 106 50.0
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 2.3e-14 82.8 115 44.3
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 2.3e-14 82.8 103 45.6
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 3.0e-14 82.4 105 45.7
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 3.9e-14 82.0 104 49.0
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 3.9e-14 82.0 99 46.5
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 5.0e-14 81.6 103 46.6
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 5.0e-14 81.6 103 46.6
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 8.6e-14 80.9 101 45.5
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 1.1e-13 80.5 105 43.8
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 1.5e-13 80.1 100 45.0
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.5e-13 80.1 104 47.1
SGA_v2.0_scaffold177G39417 Striga asiatica HOM05D042600 ORTHO05D406097 1.9e-13 79.7 79 57.0
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 3.3e-13 79.0 104 46.2
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 5.6e-13 78.2 108 45.4
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 5.6e-13 78.2 106 45.3
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 5.6e-13 78.2 103 42.7
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 9.5e-13 77.4 102 50.0
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 9.5e-13 77.4 115 42.6
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 1.6e-12 76.6 103 44.7
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.1e-12 76.3 103 43.7
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 2.1e-12 76.3 106 44.3
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 2.8e-12 75.9 100 43.0
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 2.8e-12 75.9 108 43.5
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 2.8e-12 75.9 103 44.7
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 2.8e-12 75.9 104 46.2
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 2.8e-12 75.9 104 47.1
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 4.7e-12 75.1 104 45.2
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 4.7e-12 75.1 115 41.7
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 4.7e-12 75.1 105 40.0
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 6.2e-12 74.7 104 45.2
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 6.2e-12 74.7 104 45.2
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 8.1e-12 74.3 103 41.7
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 1.8e-11 73.2 107 43.0
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.3e-11 72.8 100 46.0
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 2.3e-11 72.8 103 42.7
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 3.1e-11 72.4 119 40.3
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 3.1e-11 72.4 101 44.6
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 3.1e-11 72.4 125 38.4
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 3.1e-11 72.4 104 41.3
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 4.0e-11 72.0 116 34.5
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 4.0e-11 72.0 116 34.5
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 4.0e-11 72.0 88 50.0
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 4.0e-11 72.0 88 50.0
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 5.2e-11 71.6 103 41.7
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 6.8e-11 71.2 117 33.3
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 6.8e-11 71.2 117 33.3
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 6.8e-11 71.2 117 33.3
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 6.8e-11 71.2 99 44.4
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 8.9e-11 70.9 115 34.8
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 8.9e-11 70.9 115 34.8
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 8.9e-11 70.9 115 41.7
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 8.9e-11 70.9 104 42.3
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.2e-10 70.5 125 39.2
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 1.2e-10 70.5 99 42.4
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 1.2e-10 70.5 100 41.0
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 1.5e-10 70.1 104 43.3
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 1.5e-10 70.1 106 36.8
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 1.5e-10 70.1 106 36.8
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 1.5e-10 70.1 133 36.8
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.5e-10 70.1 116 41.4
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 1.5e-10 70.1 104 44.2
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 2.0e-10 69.7 115 34.8
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.6e-10 69.3 103 42.7
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 3.4e-10 68.9 101 41.6
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.4e-10 68.9 101 40.6
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.4e-10 68.9 101 40.6
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 3.4e-10 68.9 106 40.6
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 4.4e-10 68.6 100 41.0
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 4.4e-10 68.6 106 38.7
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 5.8e-10 68.2 115 33.0
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 5.8e-10 68.2 105 41.9
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 5.8e-10 68.2 108 38.9
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 7.5e-10 67.8 104 42.3
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 9.8e-10 67.4 101 39.6
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 9.8e-10 67.4 100 43.0
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 1.3e-09 67.0 103 40.8
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.3e-09 67.0 101 40.6
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 1.7e-09 66.6 99 42.4
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 1.7e-09 66.6 100 40.0
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 2.2e-09 66.2 107 40.2
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 2.9e-09 65.9 112 34.8
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 3.7e-09 65.5 103 36.9
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 3.7e-09 65.5 106 40.6
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 8.3e-09 64.3 115 33.0
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 8.3e-09 64.3 88 47.7
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 8.3e-09 64.3 106 35.8
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 1.1e-08 63.9 109 37.6
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 1.1e-08 63.9 105 35.2
SGA_v2.0_scaffold646G53321 Striga asiatica HOM05D003753 ORTHO05D005081 1.4e-08 63.5 56 58.9
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 1.9e-08 63.2 109 37.6
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 1.9e-08 63.2 103 38.8
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 1.9e-08 63.2 103 38.8
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.4e-08 62.8 104 41.3
arahy.Tifrunner.gnm1.ann1.WXAY6T Arachis hypogaea HOM05D003753 ORTHO05D005081 3.2e-08 62.4 120 35.0
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 3.2e-08 62.4 109 38.5
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 3.2e-08 62.4 106 39.6
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 4.1e-08 62.0 104 33.7
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 5.4e-08 61.6 104 39.4
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 5.4e-08 61.6 111 37.8
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 5.4e-08 61.6 109 40.4
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 7.1e-08 61.2 103 37.9
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 1.6e-07 60.1 103 36.9
FAN02G0879 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.7e-07 59.3 90 46.7
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 2.7e-07 59.3 110 36.4
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.5e-07 58.9 102 37.3
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 4.6e-07 58.5 106 34.0
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 4.6e-07 58.5 88 40.9
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 6.0e-07 58.2 103 33.0
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 6.0e-07 58.2 103 35.9
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 1.3e-06 57.0 52 42.3
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 1.3e-06 57.0 105 38.1
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 1.7e-06 56.6 85 32.9
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 3.9e-06 55.5 74 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 6.6e-06 54.7 103 34.0


User provided reference genes

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