Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 7.5e-197 690.3 332 100.0
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 2.2e-148 529.3 336 76.2
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.9e-136 489.6 341 69.8
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 4.5e-133 478.4 338 69.5
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 5.8e-133 478.0 337 68.2
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.9e-128 463.0 336 66.7
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 9.6e-128 460.7 340 65.0
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.5e-125 453.4 347 65.1
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 4.5e-125 451.8 328 65.9
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.2e-123 445.7 329 66.3
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 7.9e-122 441.0 339 63.7
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 1.1e-120 437.2 328 64.0
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.9e-120 436.4 336 62.5
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 4.3e-120 435.3 334 64.4
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 2.1e-119 433.0 344 63.1
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 2.1e-119 433.0 333 64.3
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 6.2e-119 431.4 339 64.0
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 6.2e-119 431.4 341 64.2
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 1.4e-118 430.3 339 63.1
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 4.0e-118 428.7 346 61.3
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 5.3e-118 428.3 346 60.4
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 5.3e-118 428.3 338 62.4
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 6.9e-118 427.9 334 63.8
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 6.9e-118 427.9 331 63.7
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.5e-117 426.8 338 63.3
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 3.4e-117 425.6 338 63.6
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.3e-116 423.7 344 60.2
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.3e-116 423.7 335 64.2
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.7e-116 423.3 334 63.5
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 2.2e-116 422.9 335 63.9
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 2.9e-116 422.5 341 61.0
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.9e-116 422.5 334 63.2
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 3.2e-115 419.1 352 58.8
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 3.2e-115 419.1 334 60.8
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 1.2e-114 417.2 332 61.7
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 2.1e-114 416.4 344 61.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 6.0e-114 414.8 316 64.9
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.0e-113 414.1 338 59.8
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.0e-113 414.1 339 59.9
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.3e-113 413.7 338 60.4
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 5.1e-113 411.8 334 59.3
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 6.7e-113 411.4 321 63.9
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 8.7e-113 411.0 343 60.3
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.1e-112 410.6 333 60.7
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 1.1e-112 410.6 329 61.1
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 1.5e-112 410.2 335 59.7
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 1.5e-112 410.2 341 58.9
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 2.5e-112 409.5 332 63.3
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 3.3e-112 409.1 336 60.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 4.3e-112 408.7 344 58.4
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 4.3e-112 408.7 334 61.4
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 4.3e-112 408.7 347 60.2
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 2.2e-111 406.4 338 58.9
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.2e-111 406.4 340 61.2
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.8e-111 406.0 334 60.8
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.7e-111 405.6 334 58.7
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 6.3e-111 404.8 339 58.4
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 2.4e-110 402.9 341 58.9
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.4e-110 402.9 336 60.4
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.4e-110 402.9 333 59.8
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 3.1e-110 402.5 335 59.4
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 3.1e-110 402.5 346 59.0
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 9.0e-110 401.0 334 59.6
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 1.5e-109 400.2 348 58.6
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 3.4e-109 399.1 339 57.8
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 4.5e-109 398.7 335 58.8
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 1.0e-108 397.5 340 59.4
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.0e-108 397.5 335 61.2
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.7e-108 396.7 338 57.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 1.4e-107 393.7 352 58.0
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 1.9e-107 393.3 343 59.2
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 2.5e-107 392.9 362 54.7
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 5.5e-107 391.7 361 54.0
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 9.3e-107 391.0 332 56.9
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 2.3e-105 386.3 374 56.1
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.0e-105 386.0 299 64.5
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 3.9e-105 385.6 349 57.3
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 5.1e-105 385.2 329 57.8
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 8.7e-105 384.4 348 57.2
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.3e-100 370.5 318 59.4
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 2.9e-100 369.4 327 58.7
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.1e-99 367.5 327 58.7
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.5e-99 365.2 323 58.5
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 9.4e-99 364.4 331 55.9
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 9.4e-99 364.4 331 55.3
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 7.9e-98 361.3 406 50.7
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 7.9e-98 361.3 390 53.3
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 7.9e-98 361.3 331 56.2
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 1.1e-96 357.5 406 51.7
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.5e-96 357.1 339 56.6
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 2.6e-96 356.3 334 53.6
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 1.7e-95 353.6 332 55.7
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.8e-95 352.8 398 50.3
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.4e-94 349.7 428 45.6
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 3.1e-94 349.4 284 60.9
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 2.9e-92 342.8 417 48.0
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 2.5e-91 339.7 330 51.2
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.2e-91 339.3 277 61.0
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.6e-90 337.0 330 53.3
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.3e-87 327.4 274 62.8
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 2.8e-87 326.2 329 50.8
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 1.1e-86 324.3 330 52.1
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 9.1e-86 321.2 304 53.9
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 1.6e-85 320.5 327 51.7
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 1.6e-85 320.5 327 51.7
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 7.7e-85 318.2 331 49.2
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 2.9e-84 316.2 324 49.4
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 2.5e-83 313.2 297 56.6
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 3.5e-77 292.7 260 60.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 1.1e-75 287.7 361 44.6
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 2.5e-75 286.6 365 42.2
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.2e-74 284.3 325 45.8
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 2.7e-74 283.1 334 47.0
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 2.7e-74 283.1 335 46.9
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 7.7e-69 265.0 402 39.3
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 1.7e-68 263.8 497 34.6
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 2.3e-68 263.5 328 43.0
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 5.0e-68 262.3 330 43.6
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 6.5e-68 261.9 428 36.7
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 2.8e-66 256.5 332 42.5
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 1.0e-65 254.6 177 66.7
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 8.3e-63 245.0 423 33.6
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.3e-60 236.9 327 38.5
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 3.8e-60 236.1 330 39.7
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.2e-58 231.1 342 39.8
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 4.7e-58 229.2 342 39.5
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.1e-46 191.4 225 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.9e-46 190.7 419 31.7
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.9e-43 180.6 200 50.5
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 2.8e-42 176.8 214 48.6
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 3.7e-39 166.4 98 72.4
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 3.1e-33 146.7 112 62.5
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 3.9e-28 129.8 258 34.5
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 1.1e-19 101.7 122 45.9
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 4.0e-17 93.2 163 35.6
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 6.9e-09 65.9 152 29.6
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 9.0e-09 65.5 63 58.7
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.0e-08 64.3 39 71.8
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 7.6e-08 62.4 122 35.2
Lalb_Chr06g0175081 Lupinus albus HOM05D002394 ORTHO05D002508 1.3e-07 61.6 121 31.4
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 1.7e-07 61.2 124 33.1
Zm00001eb020350 Zea mays HOM05D002394 ORTHO05D002508 2.2e-07 60.8 146 30.8
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 4.9e-07 59.7 123 33.3
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 4.9e-07 59.7 122 33.6
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 4.9e-07 59.7 122 33.6
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 4.9e-07 59.7 122 33.6
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 4.9e-07 59.7 122 33.6
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 4.9e-07 59.7 121 34.7
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 6.4e-07 59.3 124 32.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 6.4e-07 59.3 122 33.6
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 8.4e-07 58.9 120 29.2
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.4e-06 58.2 120 30.0
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 1.4e-06 58.2 121 31.4
Potri.017G090300 Populus trichocarpa HOM05D002394 ORTHO05D002508 1.4e-06 58.2 121 31.4
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 1.4e-06 58.2 121 31.4
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 1.9e-06 57.8 121 30.6
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 2.5e-06 57.4 124 32.3
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 3.2e-06 57.0 122 33.6
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 3.2e-06 57.0 122 33.6
DCAR_025410 Daucus carota HOM05D002394 ORTHO05D002508 3.2e-06 57.0 121 29.8
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 4.2e-06 56.6 200 26.5
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 4.2e-06 56.6 122 33.6
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 4.2e-06 56.6 122 33.6
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 4.2e-06 56.6 122 33.6
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 4.2e-06 56.6 122 33.6
Os03g0427000 Oryza sativa ssp. japonica HOM05D002394 ORTHO05D002508 4.2e-06 56.6 121 29.8
Phvul.004G033800 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 4.2e-06 56.6 143 29.4
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 4.2e-06 56.6 202 24.8
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 5.5e-06 56.2 120 29.2
DCAR_011055 Daucus carota HOM05D002394 ORTHO05D002508 7.1e-06 55.8 124 31.5
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 7.1e-06 55.8 122 32.8
Hma1.2p1_0221F.1_g093090 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 7.1e-06 55.8 120 29.2
Sabra17G0079500 Salix brachista HOM05D002394 ORTHO05D002508 9.3e-06 55.5 121 29.8


User provided reference genes

Program Settings