Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 2.7e-178 628.6 314 100.0
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 2.9e-164 582.0 338 87.6
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 3.3e-160 568.5 312 88.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 3.2e-155 552.0 314 86.3
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 4.2e-155 551.6 314 86.3
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 8.8e-153 543.9 314 84.7
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.5e-152 543.1 310 86.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.2e-149 533.5 315 84.1
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.5e-149 533.1 314 81.2
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 3.4e-149 531.9 315 84.4
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 3.4e-149 531.9 315 84.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 3.4e-149 531.9 303 85.5
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 5.9e-149 531.2 304 85.9
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.0e-148 530.4 315 82.5
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.0e-148 530.4 310 83.9
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 3.8e-148 528.5 303 85.5
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.1e-147 526.9 311 83.3
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.4e-147 526.6 315 82.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 3.2e-147 525.4 312 82.7
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 3.2e-147 525.4 356 75.3
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.2e-147 525.4 308 85.1
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.6e-146 523.1 305 83.9
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 2.1e-146 522.7 311 82.3
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.1e-146 522.7 306 84.0
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.7e-146 522.3 312 83.7
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.7e-146 522.3 312 82.4
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.7e-146 522.3 301 85.0
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 3.6e-146 521.9 303 84.2
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 4.7e-146 521.5 305 81.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 6.1e-146 521.2 312 83.7
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 7.9e-146 520.8 311 82.0
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 7.9e-146 520.8 314 82.5
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.9e-145 518.5 313 83.1
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-144 516.9 311 81.7
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.5e-144 516.5 306 84.0
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 2.0e-144 516.2 303 84.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.0e-144 516.2 312 82.4
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 2.6e-144 515.8 315 80.3
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.6e-144 515.8 309 82.5
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 5.7e-144 514.6 309 82.2
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 5.7e-144 514.6 305 83.0
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 5.7e-144 514.6 324 79.9
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-143 513.5 315 81.3
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.7e-143 513.1 310 81.9
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 2.8e-143 512.3 306 84.3
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 3.7e-143 511.9 306 84.3
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 8.2e-143 510.8 306 82.7
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-142 510.4 315 81.3
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.1e-142 508.8 296 84.5
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.1e-142 507.3 303 81.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.2e-141 506.9 311 81.0
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.5e-141 506.5 312 81.1
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 5.9e-141 504.6 314 81.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.1e-139 500.4 310 79.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.1e-139 500.4 300 84.0
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.2e-138 496.9 303 80.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.1e-138 496.1 303 80.2
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 3.6e-138 495.4 303 80.2
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.8e-137 493.0 313 79.2
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 6.7e-137 491.1 308 78.6
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 6.7e-137 491.1 314 78.7
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 8.8e-137 490.7 303 80.9
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.1e-136 490.3 314 79.0
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.0e-136 489.6 311 78.1
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 4.4e-136 488.4 305 79.7
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.8e-135 485.7 302 81.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 5.3e-134 481.5 298 79.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 5.3e-134 481.5 303 79.2
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.2e-133 480.3 304 79.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-133 480.3 320 75.9
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-133 480.3 304 79.3
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.2e-133 480.3 304 79.3
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.5e-133 478.4 311 76.8
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.0e-132 477.2 320 75.6
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.7e-132 476.5 301 77.4
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.7e-132 476.5 311 76.5
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.9e-132 475.7 311 77.5
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-132 475.7 311 76.5
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-131 473.8 311 75.9
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-131 473.4 308 76.3
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 2.5e-131 472.6 308 76.3
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 4.2e-131 471.9 315 75.6
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 5.5e-131 471.5 301 76.4
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.2e-130 470.3 315 74.6
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 4.7e-130 468.4 319 74.6
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.0e-129 467.2 297 78.1
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.8e-129 466.5 315 74.6
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.8e-129 466.5 315 76.2
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 3.0e-129 465.7 308 76.6
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 4.0e-129 465.3 314 73.9
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 4.0e-129 465.3 303 76.6
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 5.2e-129 464.9 316 73.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.2e-129 464.9 316 73.7
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.5e-128 463.4 308 76.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 9.8e-128 460.7 321 72.6
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 3.7e-127 458.8 314 74.2
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.4e-126 456.8 258 86.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-126 456.8 321 72.0
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-125 453.8 321 71.7
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.9e-124 449.1 303 75.2
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.9e-124 449.1 262 83.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.5e-120 436.8 301 72.8
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 5.6e-115 418.3 313 70.6
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.5e-112 410.2 297 72.7
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-109 400.2 230 84.8
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.0e-109 399.8 231 84.0
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.1e-107 394.0 259 77.6
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.6e-106 390.2 300 63.7
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.0e-105 387.5 304 62.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.1e-105 386.0 311 67.5
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 4.0e-105 385.6 278 65.8
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.8e-105 384.8 278 73.7
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 8.9e-105 384.4 316 64.6
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.9e-102 376.7 277 66.4
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 8.6e-100 367.9 301 59.1
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.2e-98 364.0 301 59.5
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.9e-97 357.8 221 79.6
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.4e-96 355.5 230 77.0
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 5.2e-89 332.0 246 64.6
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.9e-86 323.6 242 70.2
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 2.5e-75 286.6 299 46.5
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 2.4e-73 280.0 312 46.5
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 6.9e-73 278.5 149 87.9
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 9.3e-70 268.1 312 50.3
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-66 257.3 168 79.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.5e-51 206.8 225 45.3
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.2e-48 198.0 150 67.3
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.8e-47 193.0 112 83.0
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.8e-42 176.8 288 36.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.1e-41 173.3 393 32.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.5e-40 171.0 194 50.5
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.9e-36 156.4 94 79.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-35 154.8 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-35 154.8 94 78.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 4.3e-35 152.9 111 69.4
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 5.9e-32 142.5 114 69.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.7e-31 141.0 95 77.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.9e-31 140.2 131 60.3
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.0e-23 115.2 66 84.8
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-18 97.1 64 76.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.8e-18 96.3 98 55.1
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.8e-17 94.4 53 84.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.5e-15 85.9 57 71.9
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.1e-14 85.1 49 77.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.2e-14 82.4 45 86.7
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.2e-14 82.4 45 86.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.1e-09 66.6 84 45.2


User provided reference genes

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