Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12257 Striga asiatica HOM05D000142 ORTHO05D403617 3.9e-54 214.5 109 100.0
SGA_v2.0_scaffold58G20528 Striga asiatica HOM05D000142 ORTHO05D000124 9.5e-08 60.5 40 70.0
Os12g0632000 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D000124 1.6e-07 59.7 40 67.5
Os03g0670700 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D000124 2.8e-07 58.9 40 67.5
PSO832G0785 Papaver somniferum HOM05D000142 ORTHO05D000124 2.8e-07 58.9 41 65.9
Potri.004G155300 Populus trichocarpa HOM05D000142 ORTHO05D000124 2.8e-07 58.9 42 61.9
Zm00001eb032690 Zea mays HOM05D000142 ORTHO05D000124 3.6e-07 58.5 40 65.0
CiPaw.13G023300 Carya illinoinensis HOM05D000142 ORTHO05D000124 4.7e-07 58.2 40 65.0
CDE02G3790 Ceratophyllum demersum HOM05D000142 ORTHO05D000124 4.7e-07 58.2 42 61.9
CDE04G2192 Ceratophyllum demersum HOM05D000142 ORTHO05D000124 4.7e-07 58.2 42 61.9
MBI16_g34181_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 4.7e-07 58.2 42 61.9
Peaxi162Scf00016g00739 Petunia axillaris HOM05D000142 ORTHO05D000124 4.7e-07 58.2 41 63.4
TAR625G0947 Trochodendron aralioides HOM05D000142 ORTHO05D000124 4.7e-07 58.2 42 59.5
CANSAT01G2156 Cannabis sativa HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
CDE02G1682 Ceratophyllum demersum HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 61.9
FvH4_2g08880 Fragaria vesca HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
FAN15G3399 Fragaria x ananassa HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
FAN20G0234 Fragaria x ananassa HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
FAN24G0896 Fragaria x ananassa HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
FAN27G3102 Fragaria x ananassa HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
Lalb_Chr01g0002531 Lupinus albus HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 61.9
PSO675G2854 Papaver somniferum HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 61.9
RcHm_v2.0_Chr6g0264491 Rosa chinensis HOM05D000142 ORTHO05D000124 6.2e-07 57.8 42 59.5
SEGI_32466 Sequoiadendron giganteum HOM05D000142 ORTHO05D000124 6.2e-07 57.8 40 65.0
vmacro02100 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 6.2e-07 57.8 40 65.0
Zm00001eb134340 Zea mays HOM05D000142 ORTHO05D000124 6.2e-07 57.8 40 65.0
ATR0772G182 Amborella trichopoda HOM05D000142 ORTHO05D000124 8.0e-07 57.4 42 61.9
MBI19_g36231_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 8.0e-07 57.4 42 61.9
PSO210G2603 Papaver somniferum HOM05D000142 ORTHO05D000124 8.0e-07 57.4 41 63.4
Sabra09G0089400 Salix brachista HOM05D000142 ORTHO05D000124 8.0e-07 57.4 42 59.5
SalBow3G4446 Salvia bowleyana HOM05D000142 ORTHO05D000124 8.0e-07 57.4 42 61.9
TAR628G0585 Trochodendron aralioides HOM05D000142 ORTHO05D000124 8.0e-07 57.4 41 63.4
Aa31LG6G16000 Aethionema arabicum HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
AL7G11250 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
MSTRG.5400 Avicennia marina HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
Cc00_g34700 Coffea canephora HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
Cc02_g17520 Coffea canephora HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
HanXRQChr16g0505631 Helianthus annuus HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 61.9
MBI14_g10722_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
Manes.15G163200 Manihot esculenta HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
Nitab4.5_0000308g0150 Nicotiana tabacum HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
Nitab4.5_0002978g0030 Nicotiana tabacum HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
Prupe.8G096400 Prunus persica HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
SGA_v2.0_scaffold32G13169 Striga asiatica HOM05D000142 ORTHO05D000124 1.1e-06 57.0 40 65.0
TWI31G0254 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
TWI75G1009 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 1.1e-06 57.0 42 59.5
TAR381G0905 Trochodendron aralioides HOM05D000142 ORTHO05D000124 1.1e-06 57.0 40 62.5
unitig_699.g19877 Utricularia gibba HOM05D000142 ORTHO05D000124 1.1e-06 57.0 41 61.0
MSTRG.27697 Avicennia marina HOM05D000142 ORTHO05D000124 1.4e-06 56.6 40 65.0
Dinv23516 Davidia involucrata HOM05D000142 ORTHO05D000124 1.4e-06 56.6 42 59.5
PSO541G2993 Papaver somniferum HOM05D000142 ORTHO05D000124 1.4e-06 56.6 42 61.9
Phvul.011G045000 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 1.4e-06 56.6 40 62.5
Potri.009G116400 Populus trichocarpa HOM05D000142 ORTHO05D000124 1.4e-06 56.6 42 59.5
Sp7g36580 Schrenkiella parvula HOM05D000142 ORTHO05D000124 1.4e-06 56.6 42 61.9
Solyc01g109660.2 Solanum lycopersicum HOM05D000142 ORTHO05D000124 1.4e-06 56.6 40 62.5
Sopen01g051850 Solanum pennellii HOM05D000142 ORTHO05D000124 1.4e-06 56.6 40 62.5
PGSC0003DMG400000708 Solanum tuberosum HOM05D000142 ORTHO05D000124 1.4e-06 56.6 40 62.5
vmacro17489 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 1.4e-06 56.6 42 59.5
Actinidia00528 Actinidia chinensis HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
AT4G39260 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 61.9
BcaB03g12255 Brassica carinata HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 61.9
A08p23710 Brassica napus HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 61.9
BraA08t34323Z Brassica rapa HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 61.9
CSS0018150 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
CSS0035708 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
Migut.N01242 Erythranthe guttata HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
Hma1.2p1_0066F.1_g036360 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
Lj1g0011094 Lotus japonicus HOM05D000142 ORTHO05D000124 1.8e-06 56.2 43 58.1
MBI18_g23295_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.8e-06 56.2 42 61.9
MD10G1075500 Malus domestica HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
Manes.17G101400 Manihot esculenta HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
Peaxi162Scf00684g00327 Petunia axillaris HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
SalBow6G3505 Salvia bowleyana HOM05D000142 ORTHO05D000124 1.8e-06 56.2 40 65.0
SEGI_40471 Sequoiadendron giganteum HOM05D000142 ORTHO05D000124 1.8e-06 56.2 39 64.1
THA.LOC104824824 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
unitig_60.g25446 Utricularia gibba HOM05D000142 ORTHO05D000124 1.8e-06 56.2 43 58.1
VMungo1127G0622 Vigna mungo HOM05D000142 ORTHO05D000124 1.8e-06 56.2 42 59.5
BcaB06g27780 Brassica carinata HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
Carub.0007s0118 Capsella rubella HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 61.9
DCAR_001576 Daucus carota HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
ECA236G3593 Erigeron canadensis HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
Oeu020752.2 Olea europaea HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
PGR042G2290 Punica granatum HOM05D000142 ORTHO05D000124 2.3e-06 55.8 41 61.0
Rhsim11G0177800 Rhododendron simsii HOM05D000142 ORTHO05D000124 2.3e-06 55.8 40 62.5
Sc08g0000520 Simmondsia chinensis HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 61.9
Solyc10g051373.1 Solanum lycopersicum HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
Sopen10g023060 Solanum pennellii HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
PGSC0003DMG400033020 Solanum tuberosum HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
PGSC0003DMG400033902 Solanum tuberosum HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
PGSC0003DMG400033915 Solanum tuberosum HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 59.5
THA.LOC104807734 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 2.3e-06 55.8 42 57.1
ATR0772G137 Amborella trichopoda HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 61.9
Aqoxy4G02487 Aquilegia oxysepala HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 59.5
A01p00300 Brassica napus HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 61.9
BraA01t00037Z Brassica rapa HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 61.9
Lj3g0007386 Lotus japonicus HOM05D000142 ORTHO05D000124 3.1e-06 55.5 40 60.0
Nitab4.5_0013685g0010 Nicotiana tabacum HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 57.1
PSO675G7459 Papaver somniferum HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 59.5
Peaxi162Scf00003g01226 Petunia axillaris HOM05D000142 ORTHO05D000124 3.1e-06 55.5 42 59.5
Pp3c7_3360 Physcomitrium patens HOM05D000142 ORTHO05D000124 3.1e-06 55.5 40 65.0
GSVIVG01031973001 Vitis vinifera HOM05D000142 ORTHO05D000124 3.1e-06 55.5 40 62.5
arahy.Tifrunner.gnm1.ann1.TCQK5L Arachis hypogaea HOM05D000142 ORTHO05D000124 4.0e-06 55.1 40 65.0
BolC3t20031H Brassica oleracea HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 59.5
CSS0037631 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 57.1
CARHR247430 Cardamine hirsuta HOM05D000142 ORTHO05D000124 4.0e-06 55.1 40 65.0
Ca_20887_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 57.1
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 4.0e-06 55.1 40 62.5
Lj9A370T40 Lonicera japonica HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 57.1
Lj9A372T33 Lonicera japonica HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 57.1
Mapoly0069s0062 Marchantia polymorpha HOM05D000142 ORTHO05D000124 4.0e-06 55.1 40 60.0
Rhsim05G0074000 Rhododendron simsii HOM05D000142 ORTHO05D000124 4.0e-06 55.1 42 57.1
Atru.BG.67.p Acer truncatum HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
arahy.Tifrunner.gnm1.ann1.05X33F Arachis hypogaea HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 62.5
arahy.Tifrunner.gnm1.ann1.SN2AIN Arachis hypogaea HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 62.5
MSTRG.20080 Avicennia marina HOM05D000142 ORTHO05D000124 5.2e-06 54.7 46 54.3
BcaC02g08775 Brassica carinata HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
A04p16320 Brassica napus HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
C03p77730 Brassica napus HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 62.5
C04p50800 Brassica napus HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
BraA04t17270Z Brassica rapa HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
Carub.0004s0071 Capsella rubella HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
CiPaw.05G065000 Carya illinoinensis HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 60.0
Duzib052G0372 Durio zibethinus HOM05D000142 ORTHO05D000124 5.2e-06 54.7 43 55.8
Glyma.06G012600 Glycine max HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 62.5
Lsat_1_v5_gn_5_119120 Lactuca sativa HOM05D000142 ORTHO05D000124 5.2e-06 54.7 41 58.5
MBI04_g31947_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
Mapoly0054s0063 Marchantia polymorpha HOM05D000142 ORTHO05D000124 5.2e-06 54.7 39 64.1
Nitab4.5_0002978g0020 Nicotiana tabacum HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
Nitab4.5_0003919g0010 Nicotiana tabacum HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
Oeu041640.1 Olea europaea HOM05D000142 ORTHO05D000124 5.2e-06 54.7 42 57.1
Phvul.009G023700 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 5.2e-06 54.7 40 62.5
Actinidia27893 Actinidia chinensis HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
Aqoxy5G01626 Aquilegia oxysepala HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
AL4G10860 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
A07p04610 Brassica napus HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 54.8
BraA07t28248Z Brassica rapa HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 54.8
CiPaw.06G135000 Carya illinoinensis HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
DCAR_003671 Daucus carota HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
DCAR_003673 Daucus carota HOM05D001579 ORTHO05D002313 6.8e-06 54.3 41 58.5
Gohir.A13G034000 Gossypium hirsutum HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
Gohir.D13G032300 Gossypium hirsutum HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
Gorai.013G036800 Gossypium raimondii HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
HanXRQChr10g0306001 Helianthus annuus HOM05D000142 ORTHO05D000124 6.8e-06 54.3 41 58.5
Mapoly0001s0216 Marchantia polymorpha HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 57.5
Medtr4g070080 Medicago truncatula HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
Nn5g29616 Nelumbo nucifera HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
Psat5g007400 Pisum sativum HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
Psat7g140760 Pisum sativum HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
Sp4g00820 Schrenkiella parvula HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
THA.LOC104807840 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 6.8e-06 54.3 42 57.1
Thecc.02G084800 Theobroma cacao HOM05D000142 ORTHO05D000124 6.8e-06 54.3 40 60.0
AT2G21660 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 8.9e-06 53.9 42 54.8
arahy.Tifrunner.gnm1.ann1.T0DAJU Arachis hypogaea HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
BcaNung01272 Brassica carinata HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
BcaNung07340 Brassica carinata HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
C01p00420 Brassica napus HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
BolC1t00047H Brassica oleracea HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
CARHR112650 Cardamine hirsuta HOM05D000142 ORTHO05D000124 8.9e-06 53.9 42 57.1
Thhalv10000386m.g Eutrema salsugineum HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 60.0
Glyma.11G117600 Glycine max HOM05D000142 ORTHO05D000124 8.9e-06 53.9 42 57.1
Gohir.A03G194700 Gossypium hirsutum HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 60.0
Gorai.005G243900 Gossypium raimondii HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 60.0
Lsat_1_v5_gn_7_91261 Lactuca sativa HOM05D000142 ORTHO05D000124 8.9e-06 53.9 41 58.5
Pp3c11_19620 Physcomitrium patens HOM05D000142 ORTHO05D000124 8.9e-06 53.9 40 62.5
Sabra08G0125600 Salix brachista HOM05D000142 ORTHO05D000124 8.9e-06 53.9 42 54.8
Hund06236 Selenicereus undatus HOM05D000142 ORTHO05D000124 8.9e-06 53.9 42 59.5


User provided reference genes

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