Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.2e-118 429.9 219 100.0
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.5e-108 396.4 219 89.5
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 9.5e-108 393.7 219 88.6
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.1e-106 388.7 220 90.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 4.0e-106 388.3 219 88.1
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.2e-105 386.7 219 88.1
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.0e-105 386.0 220 86.8
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 7.5e-105 384.0 219 85.8
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.3e-104 383.3 219 86.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.7e-104 382.9 218 87.6
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.7e-104 381.7 221 86.9
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.7e-104 381.7 221 86.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 6.4e-104 380.9 219 86.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 8.3e-104 380.6 217 86.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.9e-103 379.4 219 84.5
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.4e-103 379.0 219 84.9
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 5.4e-103 377.9 216 85.2
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.4e-103 377.9 221 85.1
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 9.2e-103 377.1 219 84.5
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.2e-102 376.7 217 85.3
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.1e-102 375.9 221 84.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.7e-102 375.6 220 85.5
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 4.6e-102 374.8 219 84.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.6e-102 374.8 217 84.8
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.0e-102 374.4 221 83.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 6.0e-102 374.4 221 84.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 7.8e-102 374.0 220 85.9
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.0e-101 373.6 217 84.8
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.0e-101 373.6 221 83.7
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.7e-101 372.9 219 85.8
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.7e-101 372.9 221 83.3
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.3e-101 372.5 220 85.0
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.0e-101 372.1 217 84.3
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 3.0e-101 372.1 218 83.5
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 83.7
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.6e-101 370.5 219 84.0
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.1e-100 370.2 219 84.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 84.1
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.9e-100 369.4 219 83.6
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.3e-100 368.2 220 84.1
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 4.3e-100 368.2 219 83.1
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 9.5e-100 367.1 221 82.4
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.2e-99 366.7 220 82.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 83.6
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.6e-99 366.3 218 82.1
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.8e-99 365.5 218 83.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.2
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.2
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.2
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 84.6
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 82.7
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.2e-99 364.4 219 82.6
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 82.6
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 82.6
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 8.1e-99 364.0 230 81.7
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 8.1e-99 364.0 218 84.4
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 8.1e-99 364.0 216 84.7
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 83.2
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.8e-98 362.8 220 82.7
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.8e-98 362.8 220 81.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.8e-98 362.8 220 81.8
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 82.7
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 82.7
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.3e-98 362.5 217 82.9
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 3.1e-98 362.1 220 82.3
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.1e-98 362.1 219 81.7
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.1e-98 362.1 218 84.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 4.0e-98 361.7 218 83.9
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.3
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.3
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 83.2
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 5.2e-98 361.3 220 82.3
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.2e-98 361.3 217 82.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 82.2
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.8e-98 360.9 220 82.3
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 6.8e-98 360.9 218 82.1
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 82.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 81.8
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 81.8
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.2e-97 360.1 211 84.8
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.5e-97 359.8 218 83.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 1.5e-97 359.8 210 84.3
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.5e-97 359.8 217 81.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 82.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 82.6
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.0e-97 359.4 217 81.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 81.4
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 80.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 3.4e-97 358.6 217 81.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.4e-97 358.2 220 81.8
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.6e-97 357.5 219 82.2
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.9e-97 357.1 218 81.2
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 217 82.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 80.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 82.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 82.3
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 2.2e-96 355.9 219 81.3
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.9e-96 355.5 218 82.1
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.9e-96 355.5 221 81.0
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 3.7e-96 355.1 218 81.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 3.7e-96 355.1 218 81.7
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 81.8
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 80.4
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 80.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 80.0
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.9e-95 352.8 202 85.6
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 218 80.7
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 218 80.7
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.4e-95 352.4 219 79.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 3.2e-95 352.1 219 79.0
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 80.3
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 80.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 210 81.0
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 81.4
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 6.0e-94 347.8 225 79.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 6.0e-94 347.8 211 82.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 3.0e-93 345.5 221 80.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 6.6e-93 344.4 221 79.6
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 9.6e-92 340.5 219 78.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 9.6e-84 313.9 219 73.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.3e-83 313.5 225 73.3
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.4e-82 310.1 165 90.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.4e-82 309.3 206 75.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.2e-81 307.0 193 79.8
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.4e-81 305.4 193 78.8
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.5e-76 289.3 163 84.7
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.3e-75 287.0 165 86.1
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 6.2e-75 284.6 174 78.2
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 9.9e-73 277.3 171 79.5
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.7e-72 276.6 178 78.1
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.4e-72 274.6 172 77.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.4e-71 273.5 178 77.0
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 7.1e-71 271.2 219 67.6
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.6e-62 241.9 222 61.3
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.5e-60 236.1 220 59.5
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.6e-59 233.4 215 57.7
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 5.0e-48 195.3 127 77.2
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 6.5e-48 194.9 189 55.6
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.2e-47 192.2 193 55.4
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-44 184.1 139 73.4
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 7.4e-44 181.4 167 53.9
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.8e-26 123.6 105 62.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-15 87.0 118 50.8
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.9e-15 87.0 118 50.8
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.8e-09 65.1 57 57.9
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.8e-08 62.8 58 58.6
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.2e-06 57.8 100 38.0


User provided reference genes

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