Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold298G47651 Striga asiatica HOM05D026199 ORTHO05D030687 5.3e-187 657.5 326 100.0
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 1.5e-16 91.3 63 82.5
SGA_v2.0_scaffold78G25458 Striga asiatica HOM05D026199 ORTHO05D402147 2.0e-13 80.9 109 48.6
SGA_v2.0_scaffold204G41676 Striga asiatica HOM05D026199 ORTHO05D400830 4.5e-13 79.7 112 48.2
SGA_v2.0_scaffold653G53370 Striga asiatica HOM05D026199 ORTHO05D400440 1.0e-12 78.6 88 55.7
SGA_v2.0_scaffold19G08791 Striga asiatica HOM05D000371 ORTHO05D001484 3.0e-09 67.0 69 53.6
CANSAT78G1440 Cannabis sativa HOM05D000371 ORTHO05D001484 7.5e-08 62.4 72 50.0
Lj2A1121T86 Lonicera japonica HOM05D000371 ORTHO05D001484 9.8e-08 62.0 87 40.2
MD10G1156300 Malus domestica HOM05D000371 ORTHO05D001484 9.8e-08 62.0 82 46.3
ECA247G3328 Erigeron canadensis HOM05D000371 ORTHO05D001484 1.3e-07 61.6 93 40.9
Haze_11686 Corylus avellana HOM05D000371 ORTHO05D001484 1.7e-07 61.2 104 37.5
Prupe.8G194100 Prunus persica HOM05D000371 ORTHO05D001484 2.2e-07 60.8 82 45.1
Atru.chr6.1453 Acer truncatum HOM05D000371 ORTHO05D001484 2.8e-07 60.5 90 42.2
Haze_03331 Corylus avellana HOM05D000371 ORTHO05D001484 2.8e-07 60.5 100 39.0
MD04G1022400 Malus domestica HOM05D000371 ORTHO05D001484 2.8e-07 60.5 72 50.0
Nitab4.5_0002671g0110 Nicotiana tabacum HOM05D000371 ORTHO05D001484 2.8e-07 60.5 89 41.6
RcHm_v2.0_Chr6g0283541 Rosa chinensis HOM05D000371 ORTHO05D001484 2.8e-07 60.5 82 45.1
AUR62022158 Chenopodium quinoa HOM05D000371 ORTHO05D001484 3.7e-07 60.1 114 36.0
COL.COLO4_33102 Corchorus olitorius HOM05D000371 ORTHO05D001484 3.7e-07 60.1 100 39.0
Lsat_1_v5_gn_9_17400 Lactuca sativa HOM05D000371 ORTHO05D001484 3.7e-07 60.1 82 43.9
Oeu057851.2 Olea europaea HOM05D000371 ORTHO05D001484 3.7e-07 60.1 72 47.2
AUR62001164 Chenopodium quinoa HOM05D000371 ORTHO05D001484 4.8e-07 59.7 82 43.9
HanXRQChr08g0232301 Helianthus annuus HOM05D000371 ORTHO05D001484 4.8e-07 59.7 82 45.1
Prupe.1G172600 Prunus persica HOM05D000371 ORTHO05D001484 4.8e-07 59.7 72 50.0
Sed0025920 Sechium edule HOM05D000371 ORTHO05D001484 4.8e-07 59.7 101 37.6
CsaV3_7G026570 Cucumis sativus L. HOM05D000371 ORTHO05D001484 6.3e-07 59.3 72 47.2
Nitab4.5_0006376g0040 Nicotiana tabacum HOM05D000371 ORTHO05D001484 6.3e-07 59.3 89 40.4
Sed0010939 Sechium edule HOM05D000371 ORTHO05D001484 6.3e-07 59.3 101 37.6
Hund18462 Selenicereus undatus HOM05D000371 ORTHO05D001484 6.3e-07 59.3 78 44.9
CANSAT01G0614 Cannabis sativa HOM05D000371 ORTHO05D001484 8.3e-07 58.9 82 43.9
Cc03_g09080 Coffea canephora HOM05D000371 ORTHO05D001484 8.3e-07 58.9 96 40.6
MELO3C021107.2 Cucumis melo HOM05D000371 ORTHO05D001484 8.3e-07 58.9 90 41.1
Lj1A92T27 Lonicera japonica HOM05D000371 ORTHO05D001484 8.3e-07 58.9 87 40.2
Psat3g150280 Pisum sativum HOM05D000371 ORTHO05D001484 8.3e-07 58.9 70 48.6
Hund05592 Selenicereus undatus HOM05D000371 ORTHO05D001484 8.3e-07 58.9 68 48.5
THA.LOC104808804 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 8.3e-07 58.9 59 52.5
THA.LOC104821660 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 8.3e-07 58.9 59 52.5
TWI36G0946 Tripterygium wilfordii HOM05D000371 ORTHO05D001484 8.3e-07 58.9 104 37.5
CAN.G874.19 Capsicum annuum HOM05D000371 ORTHO05D001484 1.1e-06 58.5 72 47.2
Glyma.16G088000 Glycine max HOM05D000371 ORTHO05D001484 1.1e-06 58.5 82 41.5
Medtr7g053470 Medicago truncatula HOM05D000371 ORTHO05D001484 1.1e-06 58.5 80 43.8
QL06p027392 Quercus lobata HOM05D000371 ORTHO05D001484 1.1e-06 58.5 72 47.2
Sopen09g021120 Solanum pennellii HOM05D000371 ORTHO05D001484 1.1e-06 58.5 72 47.2
PGSC0003DMG400020802 Solanum tuberosum HOM05D000371 ORTHO05D001484 1.1e-06 58.5 72 47.2
Thecc.01G215200 Theobroma cacao HOM05D000371 ORTHO05D001484 1.1e-06 58.5 82 42.7
Aqoxy5G00042 Aquilegia oxysepala HOM05D000371 ORTHO05D001484 1.4e-06 58.2 82 42.7
AT3G25230 Arabidopsis thaliana HOM05D000371 ORTHO05D001484 1.4e-06 58.2 59 50.8
BcaC01g03234 Brassica carinata HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
A03p44140 Brassica napus HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
A06p39080 Brassica napus HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 47.2
C03p54520 Brassica napus HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
C07p39260 Brassica napus HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 47.2
BolC3t17738H Brassica oleracea HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
BolC7t44446H Brassica oleracea HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 47.2
BraA03t13544Z Brassica rapa HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
CARHR101590 Cardamine hirsuta HOM05D000371 ORTHO05D001484 1.4e-06 58.2 59 50.8
Cfa008668 Carpinus fangiana HOM05D000371 ORTHO05D001484 1.4e-06 58.2 104 36.5
Gohir.A09G208100 Gossypium hirsutum HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 48.6
Gohir.D09G201600 Gossypium hirsutum HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 48.6
Gorai.006G225400 Gossypium raimondii HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 48.6
HanXRQChr04g0108381 Helianthus annuus HOM05D000371 ORTHO05D001484 1.4e-06 58.2 82 42.7
Os04g0352400 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 1.4e-06 58.2 72 47.2
Potri.002G248300 Populus trichocarpa HOM05D000371 ORTHO05D001484 1.4e-06 58.2 82 42.7
Sp3g22860 Schrenkiella parvula HOM05D000371 ORTHO05D001484 1.4e-06 58.2 68 48.5
Sed0005666 Sechium edule HOM05D000371 ORTHO05D001484 1.4e-06 58.2 89 40.4
AL3G41150 Arabidopsis lyrata HOM05D000371 ORTHO05D001484 1.8e-06 57.8 59 50.8
Carub.0003s2563 Capsella rubella HOM05D000371 ORTHO05D001484 1.8e-06 57.8 68 48.5
Cc01_g16410 Coffea canephora HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
Thhalv10002468m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 1.8e-06 57.8 68 48.5
Glyma.05G149900 Glycine max HOM05D000371 ORTHO05D001484 1.8e-06 57.8 78 44.9
Manes.05G198600 Manihot esculenta HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
Oeu056450.4 Olea europaea HOM05D000371 ORTHO05D001484 1.8e-06 57.8 68 50.0
PGR044G1772 Punica granatum HOM05D000371 ORTHO05D001484 1.8e-06 57.8 82 42.7
Sc17g0001910 Simmondsia chinensis HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
Solyc06g083190.4 Solanum lycopersicum HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
Sopen06g034580 Solanum pennellii HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
THA.LOC104818983 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 1.8e-06 57.8 72 47.2
THA.LOC104822478 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 1.8e-06 57.8 84 42.9
BcaB08g34446 Brassica carinata HOM05D000371 ORTHO05D001484 2.4e-06 57.4 68 48.5
BcaC06g30780 Brassica carinata HOM05D000371 ORTHO05D001484 2.4e-06 57.4 72 47.2
Cpa.g.sc8.107 Carica papaya HOM05D000371 ORTHO05D001484 2.4e-06 57.4 72 47.2
CiPaw.13G051700 Carya illinoinensis HOM05D000371 ORTHO05D001484 2.4e-06 57.4 72 47.2
Ca_07499_v3 Cicer arietinum L. HOM05D000371 ORTHO05D001484 2.4e-06 57.4 80 43.8
FAN12G3068 Fragaria x ananassa HOM05D000371 ORTHO05D001484 2.4e-06 57.4 86 41.9
Lsat_1_v5_gn_8_89001 Lactuca sativa HOM05D000371 ORTHO05D001484 2.4e-06 57.4 82 41.5
Lalb_Chr19g0125951 Lupinus albus HOM05D000371 ORTHO05D001484 2.4e-06 57.4 78 44.9
Nn1g08125 Nelumbo nucifera HOM05D000371 ORTHO05D001484 2.4e-06 57.4 72 45.8
Oeu003626.1 Olea europaea HOM05D000371 ORTHO05D001484 2.4e-06 57.4 72 45.8
Phvul.010G024500 Phaseolus vulgaris HOM05D000371 ORTHO05D001484 2.4e-06 57.4 80 43.8
Psat4g204920 Pisum sativum HOM05D000371 ORTHO05D001484 2.4e-06 57.4 80 43.8
PGSC0003DMG400031522 Solanum tuberosum HOM05D000371 ORTHO05D001484 2.4e-06 57.4 85 40.0
EL10Ac7g17958 Beta vulgaris HOM05D000371 ORTHO05D001484 3.1e-06 57.0 68 48.5
BcaC01g03227 Brassica carinata HOM05D000371 ORTHO05D032339 3.1e-06 57.0 68 48.5
C03p54550 Brassica napus HOM05D000371 ORTHO05D032339 3.1e-06 57.0 68 48.5
BolC3t17742H Brassica oleracea HOM05D000371 ORTHO05D032339 3.1e-06 57.0 68 48.5
BraA06t26822Z Brassica rapa HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 45.8
Carub.0008s0820 Capsella rubella HOM05D000371 ORTHO05D001484 3.1e-06 57.0 68 47.1
Ciclev10031088m.g Citrus clementina HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 45.8
Glyma.03G086200 Glycine max HOM05D000371 ORTHO05D001484 3.1e-06 57.0 82 41.5
Gohir.A11G140700 Gossypium hirsutum HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 47.2
Gorai.007G157600 Gossypium raimondii HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 47.2
Lj1C94T2 Lonicera japonica HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 43.1
MBI07_g06206_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D001484 3.1e-06 57.0 101 35.6
MD05G1166200 Malus domestica HOM05D000371 ORTHO05D001484 3.1e-06 57.0 82 42.7
Phvul.003G064500 Phaseolus vulgaris HOM05D000371 ORTHO05D001484 3.1e-06 57.0 78 43.6
RcHm_v2.0_Chr4g0412331 Rosa chinensis HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 47.2
Sabra02G0189000 Salix brachista HOM05D000371 ORTHO05D001484 3.1e-06 57.0 82 41.5
Solyc09g057660.3 Solanum lycopersicum HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 45.8
PGSC0003DMG400020107 Solanum tuberosum HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 47.2
TWI75G0156 Tripterygium wilfordii HOM05D000371 ORTHO05D001484 3.1e-06 57.0 90 40.0
HPP92_025244 Vanilla planifolia HOM05D000371 ORTHO05D001484 3.1e-06 57.0 106 36.8
GSVIVG01002527001 Vitis vinifera HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 45.8
Zm00001eb036130 Zea mays HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 47.2
Zm00001eb241230 Zea mays HOM05D000371 ORTHO05D001484 3.1e-06 57.0 72 45.8
Actinidia09454 Actinidia chinensis HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
ATR1147G036 Amborella trichopoda HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
arahy.Tifrunner.gnm1.ann1.3FW66N Arachis hypogaea HOM05D000371 ORTHO05D001484 4.1e-06 56.6 80 43.8
MSTRG.18822 Avicennia marina HOM05D000371 ORTHO05D001484 4.1e-06 56.6 90 41.1
CAN.G1818.4 Capsicum annuum HOM05D000371 ORTHO05D001484 4.1e-06 56.6 85 40.0
DCAR_004749 Daucus carota HOM05D000371 ORTHO05D001484 4.1e-06 56.6 82 42.7
Duzib151G0019 Durio zibethinus HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 47.2
FvH4_2g18150 Fragaria vesca HOM05D000371 ORTHO05D001484 4.1e-06 56.6 82 42.7
FAN07G0161 Fragaria x ananassa HOM05D000371 ORTHO05D001484 4.1e-06 56.6 86 41.9
FAN15G0871 Fragaria x ananassa HOM05D000371 ORTHO05D001484 4.1e-06 56.6 82 42.7
FAN27G3507 Fragaria x ananassa HOM05D000371 ORTHO05D001484 4.1e-06 56.6 82 42.7
Glyma.08G106700 Glycine max HOM05D000371 ORTHO05D001484 4.1e-06 56.6 104 36.5
MBI11_g07397_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
QL09p049260 Quercus lobata HOM05D000371 ORTHO05D001484 4.1e-06 56.6 82 41.5
Sp2g18930 Schrenkiella parvula HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
TPR.G29152 Trifolium pratense HOM05D000371 ORTHO05D001484 4.1e-06 56.6 94 41.5
TAR636G2828 Trochodendron aralioides HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
HPP92_003172 Vanilla planifolia HOM05D000371 ORTHO05D001484 4.1e-06 56.6 72 45.8
VMungo0251G3607 Vigna mungo HOM05D000371 ORTHO05D001484 4.1e-06 56.6 78 43.6
Actinidia23776 Actinidia chinensis HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 45.8
AL8G21550 Arabidopsis lyrata HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 45.8
BolC7t44006H Brassica oleracea HOM05D001825 ORTHO05D010533 5.4e-06 56.2 27 92.6
CSS0033787 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 5.4e-06 56.2 68 47.1
CARHR183440 Cardamine hirsuta HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 45.8
Cfa019793 Carpinus fangiana HOM05D001825 ORTHO05D002336 5.4e-06 56.2 27 92.6
Ciclev10022447m.g Citrus clementina HOM05D001825 ORTHO05D002336 5.4e-06 56.2 27 92.6
Haze_18656 Corylus avellana HOM05D001825 ORTHO05D002336 5.4e-06 56.2 27 92.6
Dinv30283 Davidia involucrata HOM05D000371 ORTHO05D001484 5.4e-06 56.2 68 47.1
Dinv30670 Davidia involucrata HOM05D000371 ORTHO05D001484 5.4e-06 56.2 68 47.1
Dinv34330 Davidia involucrata HOM05D000371 ORTHO05D001484 5.4e-06 56.2 68 47.1
Duzib138G0528 Durio zibethinus HOM05D000371 ORTHO05D001484 5.4e-06 56.2 68 48.5
ECA236G2728 Erigeron canadensis HOM05D000371 ORTHO05D001484 5.4e-06 56.2 82 41.5
FvH4_4g12830 Fragaria vesca HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 45.8
FAN17G0261 Fragaria x ananassa HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 45.8
HanXRQChr08g0232311 Helianthus annuus HOM05D000371 ORTHO05D022412 5.4e-06 56.2 55 56.4
Lalb_Chr12g0205901 Lupinus albus HOM05D000371 ORTHO05D001484 5.4e-06 56.2 72 47.2
Potri.014G149400 Populus trichocarpa HOM05D000371 ORTHO05D001484 5.4e-06 56.2 93 39.8
Sabra14G0112600 Salix brachista HOM05D000371 ORTHO05D001484 5.4e-06 56.2 84 40.5
VMungo0331G1976 Vigna mungo HOM05D000371 ORTHO05D001484 5.4e-06 56.2 82 41.5
VMungo1389G0002 Vigna mungo HOM05D001825 ORTHO05D002336 5.4e-06 56.2 27 92.6
Aa31sc18G140 Aethionema arabicum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 66 50.0
Ah.08g218900 Amaranthus hybridus HOM05D000371 ORTHO05D001484 7.0e-06 55.8 59 49.2
Ah.11g045010 Amaranthus hybridus HOM05D001825 ORTHO05D002336 7.0e-06 55.8 27 88.9
Ah.13g077790 Amaranthus hybridus HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
arahy.Tifrunner.gnm1.ann1.8X4Q28 Arachis hypogaea HOM05D000371 ORTHO05D001484 7.0e-06 55.8 70 47.1
Ciclev10019417m.g Citrus clementina HOM05D001825 ORTHO05D002336 7.0e-06 55.8 27 92.6
Haze_17456 Corylus avellana HOM05D001825 ORTHO05D002336 7.0e-06 55.8 27 88.9
Thhalv10003906m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
Gohir.A07G091400 Gossypium hirsutum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 45.8
Gohir.D07G096100 Gossypium hirsutum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 45.8
Gorai.001G103400 Gossypium raimondii HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 45.8
Lj4g0024760 Lotus japonicus HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
Oeu019878.2 Olea europaea HOM05D000371 ORTHO05D001484 7.0e-06 55.8 55 54.5
Os02g0491400 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 45.8
PSO675G6938 Papaver somniferum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 44.4
Peaxi162Scf00286g00929 Petunia axillaris HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
Rhsim01G0249900 Rhododendron simsii HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
SEGI_25034 Sequoiadendron giganteum HOM05D000371 ORTHO05D001484 7.0e-06 55.8 78 43.6
SGA_v2.0_scaffold156G37298 Striga asiatica HOM05D000371 ORTHO05D001484 7.0e-06 55.8 72 45.8
SGA_v2.0_scaffold29G12344 Striga asiatica HOM05D021917 ORTHO05D030687 7.0e-06 55.8 43 60.5
vmacro14711 Vaccinium macrocarpon HOM05D000371 ORTHO05D001484 7.0e-06 55.8 68 47.1
BolC9t56056H Brassica oleracea HOM05D001825 ORTHO05D010533 9.1e-06 55.5 35 74.3
FAN24G2049 Fragaria x ananassa HOM05D000371 ORTHO05D001484 9.1e-06 55.5 82 41.5
Gohir.A10G130600 Gossypium hirsutum HOM05D000371 ORTHO05D001484 9.1e-06 55.5 72 45.8
Lj3g0022519 Lotus japonicus HOM05D000371 ORTHO05D001484 9.1e-06 55.5 76 44.7
Manes.12G050700 Manihot esculenta HOM05D000371 ORTHO05D001484 9.1e-06 55.5 101 37.6
Nitab4.5_0003823g0090 Nicotiana tabacum HOM05D001825 ORTHO05D002336 9.1e-06 55.5 26 96.2
Nitab4.5_0004895g0070 Nicotiana tabacum HOM05D001825 ORTHO05D002336 9.1e-06 55.5 26 96.2
Peaxi162Scf00382g00122 Petunia axillaris HOM05D001825 ORTHO05D002336 9.1e-06 55.5 26 96.2
GSVIVG01005149001 Vitis vinifera HOM05D000371 ORTHO05D022412 9.1e-06 55.5 56 53.6


User provided reference genes

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