Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11827 Striga asiatica HOM05D053379 ORTHO05D037776 4.9e-188 661.0 337 100.0
THA.LOC104804883 Tarenaya hassleriana HOM05D053379 ORTHO05D037776 1.7e-23 114.4 147 49.7
SGA_v2.0_scaffold330G48905 Striga asiatica HOM05D000276 ORTHO05D037776 1.6e-21 107.8 50 94.0
unitig_744.g24479 Utricularia gibba HOM05D040244 ORTHO05D035907 5.5e-14 82.8 155 38.1
SGA_v2.0_scaffold35G13991 Striga asiatica HOM05D011902 ORTHO05D405618 3.1e-09 67.0 44 68.2
SGA_v2.0_scaffold247G44842 Striga asiatica HOM05D011902 ORTHO05D401553 7.0e-09 65.9 40 75.0
SGA_v2.0_scaffold101G29776 Striga asiatica HOM05D011902 ORTHO05D404471 9.1e-09 65.5 44 65.9
EL10Ac7g16580 Beta vulgaris HOM05D000276 ORTHO05D004241 1.7e-07 61.2 100 42.0
PSO063G4880 Papaver somniferum HOM05D000276 ORTHO05D004241 2.9e-07 60.5 130 36.2
PSO409G0046 Papaver somniferum HOM05D000276 ORTHO05D004241 2.9e-07 60.5 130 36.2
MBI10_g06733_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004241 5.0e-07 59.7 100 41.0
BcaB04g17541 Brassica carinata HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
BcaC07g37230 Brassica carinata HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
A08p05870 Brassica napus HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
C08p06510 Brassica napus HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
BolC8t47498H Brassica oleracea HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
BraA08t32589Z Brassica rapa HOM05D000276 ORTHO05D004241 6.5e-07 59.3 100 40.0
AUR62033853 Chenopodium quinoa HOM05D000276 ORTHO05D004241 6.5e-07 59.3 37 70.3
AUR62041673 Chenopodium quinoa HOM05D000276 ORTHO05D004241 6.5e-07 59.3 37 70.3
TPR.G20162 Trifolium pratense HOM05D000276 ORTHO05D004241 6.5e-07 59.3 37 70.3
Atru.chr13.441 Acer truncatum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Ah.11g043220 Amaranthus hybridus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Ah.11g043240 Amaranthus hybridus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
ATR0693G251 Amborella trichopoda HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.LWQV1C Arachis hypogaea HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.P4XZCB Arachis hypogaea HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
MSTRG.1265 Avicennia marina HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
MSTRG.22305 Avicennia marina HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CANSAT25G0548 Cannabis sativa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CANSAT25G0556 Cannabis sativa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CAN.G1226.42 Capsicum annuum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Cfa018182 Carpinus fangiana HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CiPaw.15G081600 Carya illinoinensis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CiPaw.16G060400 Carya illinoinensis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CDE04G1556 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CDE12G0026 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Ca_13359_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
ClCG08G014860 Citrullus lanatus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Ciclev10002110m.g Citrus clementina HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
COL.COLO4_26280 Corchorus olitorius HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Haze_17936 Corylus avellana HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
MELO3C010960.2 Cucumis melo HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CsaV3_2G028900 Cucumis sativus L. HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
DCAR_009970 Daucus carota HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
DCAR_022475 Daucus carota HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Dinv39439 Davidia involucrata HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Duzib041G0309 Durio zibethinus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Duzib093G1628 Durio zibethinus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Duzib116G0719 Durio zibethinus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
ECA232G2769 Erigeron canadensis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Migut.C00752 Erythranthe guttata HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Eucgr.F01586 Eucalyptus grandis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
FvH4_2g39570 Fragaria vesca HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
FAN15G3433 Fragaria x ananassa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
FAN20G0466 Fragaria x ananassa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
FAN27G0463 Fragaria x ananassa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Glyma.09G161300 Glycine max HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Glyma.14G073000 Glycine max HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Glyma.17G252100 Glycine max HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.A01G114600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.A05G258600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.A06G009000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.D01G103000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.D05G260300 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gohir.D06G004500 Gossypium hirsutum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gorai.002G126700 Gossypium raimondii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gorai.009G272200 Gossypium raimondii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Gorai.010G009100 Gossypium raimondii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Hma1.2p1_0203F.1_g086175 Hydrangea macrophylla HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Lsat_1_v5_gn_4_117781 Lactuca sativa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Lj4A788G55 Lonicera japonica HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Lj5g0000748 Lotus japonicus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Lalb_Chr22g0354681 Lupinus albus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
MD08G1028900 Malus domestica HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Manes.05G157400 Manihot esculenta HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Manes.18G022500 Manihot esculenta HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Medtr1g022410 Medicago truncatula HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Nitab4.5_0001091g0040 Nicotiana tabacum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Nitab4.5_0003265g0090 Nicotiana tabacum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Nitab4.5_0004802g0030 Nicotiana tabacum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Nitab4.5_0008031g0050 Nicotiana tabacum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Oeu018215.1 Olea europaea HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
PSO170G6685 Papaver somniferum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
PSO210G4790 Papaver somniferum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Peaxi162Scf00064g00526 Petunia axillaris HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Phvul.001G013000 Phaseolus vulgaris HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Psat6g008360 Pisum sativum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Potri.002G033900 Populus trichocarpa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Potri.005G229200 Populus trichocarpa HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Prupe.1G376700 Prunus persica HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
PGR083G0234 Punica granatum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
RcHm_v2.0_Chr6g0301351 Rosa chinensis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sabra02G0027200 Salix brachista HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sabra05G0177100 Salix brachista HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
SalBow7G3764 Salvia bowleyana HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sed0012133 Sechium edule HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sed0027223 Sechium edule HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Hund26587 Selenicereus undatus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Hund26588 Selenicereus undatus HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sc02g0005930 Simmondsia chinensis HOM05D000276 ORTHO05D004241 8.5e-07 58.9 100 41.0
Solyc04g080590.4 Solanum lycopersicum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Sopen04g034180 Solanum pennellii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
PGSC0003DMG400003740 Solanum tuberosum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
PGSC0003DMG400015462 Solanum tuberosum HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
SGA_v2.0_scaffold11G05817 Striga asiatica HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
SGA_v2.0_scaffold201G41398 Striga asiatica HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
Thecc.08G030100 Theobroma cacao HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
TWI12G0517 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
TWI36G0782 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
TAR376G0460 Trochodendron aralioides HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
TAR381G1175 Trochodendron aralioides HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
TAR628G0879 Trochodendron aralioides HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
unitig_32.g11150 Utricularia gibba HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
unitig_748.g7753 Utricularia gibba HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
VMungo0464G0586 Vigna mungo HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
VMungo0647G0747 Vigna mungo HOM05D000276 ORTHO05D004241 8.5e-07 58.9 37 70.3
CSS0017933 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 1.1e-06 58.5 100 39.0
CSS0039888 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 1.1e-06 58.5 100 39.0
SEGI_24504 Sequoiadendron giganteum HOM05D000276 ORTHO05D004241 1.1e-06 58.5 37 70.3
vmacro21660 Vaccinium macrocarpon HOM05D000276 ORTHO05D004241 1.1e-06 58.5 100 39.0
Aa31LG9G12860 Aethionema arabicum HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
AL1G53390 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
AL8G18280 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
AT1G47250 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
AT5G42790 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
Carub.0001s3602 Capsella rubella HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
Carub.0008s0611 Capsella rubella HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
CARHR036800 Cardamine hirsuta HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
Thhalv10011712m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
Sp1g34380 Schrenkiella parvula HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
THA.LOC104801918 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
THA.LOC104812561 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 1.5e-06 58.2 100 40.0
BcaC02g10805 Brassica carinata HOM05D000276 ORTHO05D004241 1.9e-06 57.8 100 39.0
C04p24960 Brassica napus HOM05D000276 ORTHO05D004241 1.9e-06 57.8 100 39.0
BolC4t23995H Brassica oleracea HOM05D000276 ORTHO05D004241 1.9e-06 57.8 100 39.0
CSS0046824 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 1.9e-06 57.8 100 39.0
Lalb_Chr24g0398911 Lupinus albus HOM05D000276 ORTHO05D004241 1.9e-06 57.8 30 83.3
Peaxi162Scf00140g00018 Petunia axillaris HOM05D000276 ORTHO05D004241 1.9e-06 57.8 30 83.3
HPP92_000285 Vanilla planifolia HOM05D000276 ORTHO05D004241 1.9e-06 57.8 37 67.6
BcaB07g31044 Brassica carinata HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
BcaC04g21970 Brassica carinata HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
BcaC06g31747 Brassica carinata HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
A02p27580 Brassica napus HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
A09p19980 Brassica napus HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
C09p25340 Brassica napus HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
BolC2t10372H Brassica oleracea HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
BolC9t55433H Brassica oleracea HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
BraA02t07791Z Brassica rapa HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
CARHR181760 Cardamine hirsuta HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
Thhalv10003255m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
HanXRQChr09g0269001 Helianthus annuus HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
Sp2g07450 Schrenkiella parvula HOM05D000276 ORTHO05D004241 2.5e-06 57.4 37 67.6
Actinidia15345 Actinidia chinensis HOM05D000276 ORTHO05D004241 3.2e-06 57.0 37 67.6
Actinidia22528 Actinidia chinensis HOM05D000276 ORTHO05D004241 3.2e-06 57.0 37 67.6
Aqoxy5G01588 Aquilegia oxysepala HOM05D000276 ORTHO05D004241 3.2e-06 57.0 37 67.6
HanXRQChr16g0501521 Helianthus annuus HOM05D000276 ORTHO05D004241 3.2e-06 57.0 37 67.6
SGA_v2.0_scaffold186G40193 Striga asiatica HOM05D015626 ORTHO05D007515 3.2e-06 57.0 41 61.0
EL10Ac9g20744 Beta vulgaris HOM05D001804 ORTHO05D004241 5.5e-06 56.2 37 67.6
Cpa.g.sc800.1 Carica papaya HOM05D000276 ORTHO05D004241 5.5e-06 56.2 37 64.9
Mapoly0138s0042 Marchantia polymorpha HOM05D000276 ORTHO05D004241 5.5e-06 56.2 37 67.6
Pp3c16_23890 Physcomitrium patens HOM05D000276 ORTHO05D004241 5.5e-06 56.2 37 67.6
Pp3c25_15330 Physcomitrium patens HOM05D000276 ORTHO05D004241 5.5e-06 56.2 37 67.6
QL02p009221 Quercus lobata HOM05D000276 ORTHO05D004241 5.5e-06 56.2 37 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2334 Anthoceros agrestis HOM05D000276 ORTHO05D004241 7.2e-06 55.8 37 67.6
CBR_g54888 Chara braunii HOM05D000276 ORTHO05D004241 7.2e-06 55.8 37 64.9
Zm00001eb231490 Zea mays HOM05D000276 ORTHO05D004241 7.2e-06 55.8 30 80.0


User provided reference genes

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